Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq67946 111 1e-19 seq298471 102 8e-17 >seq67946 Length=21248 Score = 111 bits (122), Expect = 1e-19 Identities = 374/580 (64%), Gaps = 2/580 (0%) Strand=Plus/Minus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||||||||||||||| || |||||||||||||| |||| ||||| || || ||| Sbjct 3708 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 3649 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 ||||| ||||| || || |||||||| | ||||||||| | | || || ||| Sbjct 3648 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAG 3589 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT 11806 || || || || ||| ||||| || || | | || | | | | | | Sbjct 3588 AAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTTTCGGACCCATCG 3529 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 ||||| |||||| | || ||||||| || || ||||| || || || Sbjct 3528 ATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGCACGG 3469 Query 11867 AATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 || || | | ||||| | ||| | | || | || | | ||||| ||||| Sbjct 3468 AACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATC 3409 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986 || ||||| ||||| || || || ||||| || ||||||||| || ||||| | | | Sbjct 3408 TCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCGGCAACC 3349 Query 11987 TGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 || ||||| ||| || ||| | || | ||||| || || || || | || Sbjct 3348 TGGACATCTTTCAT-GAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGC 3290 Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATC 12105 |||||| || || | ||| | || || | |||| | |||| || ||||| | Sbjct 3289 AAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGTG 3230 Query 12106 ATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTT 12165 | ||| | || | ||| |||||||| | ||||| ||| ||||| | || || Sbjct 3229 ACGAGTATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCATGGCTTTCTT 3170 Query 12166 ATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 ||||||| ||| || | |||||| ||| ||||| ||| Sbjct 3169 GTACATTTCCCAAATCTGTGGATACTGAATTGGGAACATA 3130 >seq298471 Length=8164 Score = 102 bits (112), Expect = 8e-17 Identities = 167/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| |||||| || || ||||||| ||| ||||||||||| ||||||| || Sbjct 5002 TTGAGGCCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTG 5061 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| |||||| | || ||| || ||||| | ||| || || | ||| Sbjct 5062 AGACATCAAATGATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGA 5121 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT---ATTATTCTGTTTAAGTAG 38576 ||| ||||| |||||||||||||| ||||| | || || | | || ||||| || Sbjct 5122 TACTCTCATCAGCATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATC--TTTAA-AAG 5178 Query 38577 ATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTAT 38634 || || |||| | ||||| | ||||| ||| ||| | | ||||| |||||| Sbjct 5179 GTAAGACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTAT 5236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466714068779200