Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq250116 107 2e-18 seq260618 93.3 4e-14 seq142480 82.4 8e-11 >seq250116 Length=2524 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || | |||| |||||||||||||| ||||| ||||| Sbjct 177 CCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCA 236 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| |||||||| |||||| ||||||| | |||||||| ||||| Sbjct 237 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGA 296 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| | || | ||| | | || | ||||| | ||| || Sbjct 297 ATGCCTTCCTTGTC-TTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCGAC 355 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | ||||| ||||| | || || || ||||| ||||| Sbjct 356 CTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 403 >seq260618 Length=7988 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| || ||||||| || ||||| || || ||||| ||||| Sbjct 395 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 336 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || || || || || ||| |||||| | ||||| || || || Sbjct 335 AGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 276 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | ||| | | || | ||||| | ||||| Sbjct 275 ATACCTTCTTTGTC-CTGAATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCAC 217 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||| ||||| || || || || |||||||| Sbjct 216 CTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 169 >seq142480 Length=7342 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 || ||| | ||||| || || ||||| |||||||| ||||| || || || || Sbjct 4947 CAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTTCTACCATC 5006 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | ||||| |||||| | ||||| | |||||||| ||||||||||||||||| || Sbjct 5007 TTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATC 5066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494146836656000