Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq67946 174 2e-38 seq276686 86.0 8e-12 >seq67946 Length=21248 Score = 174 bits (192), Expect = 2e-38 Identities = 588/909 (65%), Gaps = 20/909 (2%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||||||| ||| || || || || || | || || || ||||||||||| ||| Sbjct 4011 GACATAACTGAGGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 3952 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878 | || || ||||| |||| || ||||| | |||| || || || | | | Sbjct 3951 TGTAAACTAATCAGCTCCATCCAATCGAATGGATTCTGAGCATTGTACATCTTGTCATAA 3892 Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938 ||||| || | |||||| || || | || ||||| ||| | |||||| || | | Sbjct 3891 CCCAAAGCATCCAACAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCA 3832 Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGA 41996 |||||||| | || | |||||||| |||| | ||| | | | ||| || | Sbjct 3831 TTCATTCCCACCAGAGCACAAGGAAGAGCATCACAC-ACGAACTCCCT-TTCTATCTCCA 3774 Query 41997 CCGCGTCTGTTATAATAGATCTTACTGTTTCTTCA-----CTCGGTGGATACAATAAATG 42051 | || |||| | ||| || ||| || ||| || || || | || || Sbjct 3773 CAGCATCTGCAACAATTCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCA-AACTG 3715 Query 42052 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTT 42111 | | | |||||| || ||||| ||||||| ||| || ||||| |||||| || || Sbjct 3714 T----AAAGCAAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATT 3659 Query 42112 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGA 42171 || || || | ||| ||||||| || || ||||| | ||||||||| || || Sbjct 3658 TGAGAAGGTTAATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCT 3599 Query 42172 TCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---C 42228 ||| ||||| || ||||| || ||||| || | | | ||| | || | Sbjct 3598 TCCGCTGAAGAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTTTC 3539 Query 42229 GGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 42288 || | ||| ||||| | ||||| | |||||||||| |||||||| || || Sbjct 3538 GGACC---CATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGT 3482 Query 42289 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAA 42348 || || ||| || | | | | ||||| | | ||| || | || | || | || Sbjct 3481 CTCAATTGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAG 3422 Query 42349 AAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 42408 | ||| ||||| || ||||| || || |||||||| || || || || |||||| | Sbjct 3421 CAAACTGTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACG 3362 Query 42409 GGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCC 42468 ||||||| |||||| || ||| | || | | |||| | || || || || || Sbjct 3361 AGCCTCGGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCC 3302 Query 42469 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA 42528 ||| ||| |||||||| || | ||||| | || |||| |||| | | ||||| Sbjct 3301 GTCTGAGGCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAG 3242 Query 42529 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGC 42588 || | ||| | | |||| | || | ||| ||||||||| ||||||| || ||||| Sbjct 3241 GTTTTCCCAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAAGATGC 3182 Query 42589 TTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648 || || || ||||| | ||| || | |||| ||||||||||| ||| |||| Sbjct 3181 CATGGCTTTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCG 3122 Query 42649 ATTTGGATT 42657 || ||| || Sbjct 3121 ATCTGGGTT 3113 >seq276686 Length=16051 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||| || || | |||| ||| |||| |||| | || | | ||| |||||||| ||| Sbjct 6024 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCCA 6083 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || |||| ||||| || || ||||| || ||| || ||||||||||| | ||| Sbjct 6084 TTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTGCCACGAATATTGTGCACAGAT 6143 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | || ||||| || || ||| || | || || || | || ||||| ||| Sbjct 6144 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATATG 6203 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 ||||| |||||||| || ||||| | || || |||||| Sbjct 6204 CCCTCAATACTATCGTCTTTCATGCATATCAGGAAGCAGCTA 6245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668545414776800