Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq269538 125 5e-24 seq260619 98.7 7e-16 seq260618 98.7 7e-16 seq261322 95.1 9e-15 seq68649 93.3 3e-14 seq30399 93.3 3e-14 seq45869 82.4 6e-11 >seq269538 Length=12246 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| | || || | ||| || || || || || || |||||||| || Sbjct 439 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 380 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | ||| |||| || | |||||| ||||| | |||||||| |||||||| ||| Sbjct 379 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 320 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || || ||||| ||| |||||| || ||| | || |||||||| | | || || Sbjct 319 ATACCCTCCTTGTCTTGAATCTTTGCT-TTCACATTGTCAATGGTATCTGAACTCTCAAC 261 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || || |||| ||| || |||||||||||||| Sbjct 260 CTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 213 >seq260619 Length=5677 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || || || ||||||||||| || | || |||| || Sbjct 211 ACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCA 270 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| || | ||||| | ||| ||||| ||||| ||||| ||||| Sbjct 271 AGCTGCTTGCCCGCAAAGATCAACCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 330 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || ||||| || |||| || || | ||| ||||| || Sbjct 331 ATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTT 390 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| |||||| || ||||||||||| Sbjct 391 CCTGTCAAAGTTTTCACGAAAATTTGCAT 419 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 15173 TCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15232 || || || ||||||||||| || | || |||| || | || ||||| || | Sbjct 1 TCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCAAGCTGCTTGCCCGCAAAG 60 Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATT 15292 ||||| | ||| ||||| ||||| ||||| ||||| || || ||| ||| | Sbjct 61 ATCAACCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTAGCCTTAACATTG 120 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 || ||||| ||| |||| || || | ||| ||||| || || |||| ||| || ||| Sbjct 121 TCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTCACA 180 Query 15353 AAAATTTGCAT 15363 ||||||||||| Sbjct 181 AAAATTTGCAT 191 >seq260618 Length=7988 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || || || ||||||||||| || | | |||| || Sbjct 377 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGGCCGTCCTCA 318 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || || || | ||||| | || ||||| |||||| ||||||||||| | Sbjct 317 AGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGA 258 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| | || ||||| || | |||| || || | ||| || || || Sbjct 257 ATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCACCTCAAGGGTGATTGTCTTG 198 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| || || ||||| |||||||| Sbjct 197 CCAGTCAAGGTCTTCACAAAGATTTGCAT 169 >seq261322 Length=6793 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || |||||||| || ||| ||| | || || | || Sbjct 4375 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGC 4434 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | ||||| || || ||||| |||||| ||||| ||||| ||| || Sbjct 4435 TTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTA 4494 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || ||||| || ||||||||||| || || ||| Sbjct 4495 GCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTC 4554 Query 15341 AGAGTTTTTACAAAAATTTGCATATTT 15367 || || || ||||| || ||||| ||| Sbjct 4555 AGGGTCTTCACAAAGATCTGCATTTTT 4581 >seq68649 Length=3576 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || |||||||| || ||| ||| | || || | || Sbjct 2498 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGC 2439 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | ||||| | || ||||| |||||| ||||| ||||| ||| || Sbjct 2438 TTTCCCGCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTA 2379 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTT-TCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | || |||||||| | || ||||| ||||||||||| || || || || Sbjct 2378 GCCTTAACATTGTCAATGGTATC-CGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGT 2320 Query 15340 CAGAGTTTTTACAAAAATTTGCATATTT 15367 || || || ||||| || ||||| ||| Sbjct 2319 TAGGGTCTTCACAAAGATCTGCATTTTT 2292 >seq30399 Length=1829 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| |||||||| || || || ||||||||||| |||| | | |||| || Sbjct 953 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGTCCGTCCTCC 894 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || || |||||| | || | | ||| || || ||||||||||| || || Sbjct 893 AACTGCTTTCCAGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCCTTATCCTGG 834 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || | || || ||||| | |||| || |||| ||| || || || Sbjct 833 ATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGTGATAGTCTTT 774 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| ||||| || ||||| Sbjct 773 CCGGTGAGAGTTTTCACAAAGATCTGCAT 745 >seq45869 Length=5042 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 |||| || ||||||||||| |||| | | | ||||| | || || || ||| | | Sbjct 4375 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 4434 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATT 15292 |||| || || ||||| |||||| ||||| ||||| ||| || ||| || ||| | Sbjct 4435 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCT-TTGACATTG 4493 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 || || || ||||| ||| || || | || || || || || || |||||||| || Sbjct 4494 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 4553 Query 15353 AAAATTTGCATATT 15366 || || ||||| || Sbjct 4554 AAGATCTGCATTTT 4567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360814461238380