Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10-
06] 309,180 sequences; 688,247,059 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq260618 93.3 3e-14
seq269538 86.0 5e-12
>seq260618
Length=7988
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897
|||||| |||||||||||||| || ||||| ||||||| || | | || || || ||
Sbjct 828 GTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGTTG 769
Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957
|| || ||| | || ||||||||||| ||| || | ||||| ||||| ||||||
Sbjct 768 CTTCCCTGCAAAGATCAGTCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGAATTTT 709
Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017
|| || | | | | ||||| | |||| || | || |||||||| || ||
Sbjct 708 AGCCTTCACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGT 649
Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041
|| || || |||||||| |||||
Sbjct 648 CAAGGTCTTCACAAAAATCTGCAT 625
>seq269538
Length=12246
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
||||||| ||| | ||||||| || | || |||||||| || || ||||| || ||
Sbjct 439 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 380
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| || | ||||||| || |||||||| ||| | || | | ||| || || |||
Sbjct 379 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 320
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994
| ||||| ||||| ||| || ||| || | | | | ||||| | |||
Sbjct 319 ATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACC 260
Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | ||||| || || || || ||||| |||||||||||||||||
Sbjct 259 TCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 413010635276920
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |