Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq29975 98.7 6e-16 seq45869 87.8 1e-12 >seq29975 Length=3370 Score = 98.7 bits (108), Expect = 6e-16 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 ||| || | ||| | ||| ||||| ||||| ||||||||||||| ||| | | || || Sbjct 2315 CAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAG-CAAGTGTA--TGATC 2371 Query 33217 ATCC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273 |||| ||||| ||||||| ||||| ||| | ||| || || | ||| || |||||||| Sbjct 2372 ATCCTTAAATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGGGAATTCCTTCTTT 2431 Query 33274 TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 || |||| ||| || | | ||| |||| | | || |||||||| || Sbjct 2432 GTCTTCAATCTTTGCTTTAACATTGTTAATGGTGTTGGAACTCTTCACATCCAGAGTAAT 2491 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| | |||||||| || || |||||||| Sbjct 2492 GGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 2527 >seq45869 Length=5042 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 33180 CTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATA 33239 |||| || || |||||||||| | | | || || || | |||||||| || | Sbjct 4375 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 4434 Query 33240 TTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTT 33299 | || || |||||||||| || || ||||| || || |||| ||| || | | Sbjct 4435 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 4494 Query 33300 GAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGA 33359 ||| |||||| | | || ||| || || || ||||| || |||||||||||||| |||| Sbjct 4495 CAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 4554 Query 33360 AAATTTGCATGTT 33372 | || ||||| || Sbjct 4555 AGATCTGCATTTT 4567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317576404163640