Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq218976 95.1 1e-14 seq261322 91.5 1e-13 seq30399 91.5 1e-13 >seq218976 Length=24853 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/225 (71%), Gaps = 9/225 (4%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| | ||| || ||| |||||| || |||||||| || || || || || | |||| Sbjct 11076 CACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC-AAGAGTACGACCATCCT 11018 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| ||| || |||| ||||||||||| || || | | |||||||||| Sbjct 11017 CAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCT 10958 Query 48636 TAATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 || || |||| || | || ||||| |||| |||||| ||| | || || | Sbjct 10957 GGATCTT-GGCTTTCACATTGTCG--ATGGTGTCGGAAGACTCAACCTCTAGGGTGATCG 10901 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT-GTCTTGA 48736 | || || || || |||||||| || ||||||||| | |||| || Sbjct 10900 TCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTCGTCTGGA 10856 >seq261322 Length=6793 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| ||||| | ||| | ||||| |||||| Sbjct 4375 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGC 4434 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 |||||| || |||| || |||||||| || || | | ||||||||| ||| || Sbjct 4435 TTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTA 4494 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| || | ||||| ||| | || ||||| || || || Sbjct 4495 GCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTC 4554 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || |||||||| |||||||| Sbjct 4555 AGGGTCTTCACAAAGATCTGCAT 4577 >seq30399 Length=1829 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||| || ||| |||||| || |||||||||||||| | || ||||||| Sbjct 954 CACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGTCCGTCCTC 895 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| || || | || | | ||||||||| || | | |||||| ||| Sbjct 894 CAACTGCTTTCCAGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCCTTATCCTG 835 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||| | | | || || ||||| | | ||| ||| | || || || Sbjct 834 GATCTTAGCCTTAACGTTGTCG--ATTGTATCAGAACTTTCCACCTCTAGGGTGATAGTC 777 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || |||||||||||||||||||| ||||||||| Sbjct 776 TTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 744 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || |||||||| || || || || || ||||||| ||||| Sbjct 1631 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC-AAGGGTGCGGCCGTCCTCGAGCTG 1573 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| || |||| || | |||||| || || | | ||||||||| || || Sbjct 1572 CTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTT 1513 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | ||||| |||| ||| ||| | || ||||| || ||||| Sbjct 1512 AGCCTTAACATTATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGT 1453 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || |||||||||||||| Sbjct 1452 GAGGGTCTTAACAAAAATCTGCAT 1429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419663870189180