Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq290085 122 5e-23 seq278466 120 2e-22 seq174925 113 2e-20 seq113256 111 8e-20 seq52653 111 8e-20 seq219607 109 3e-19 seq135502 109 3e-19 seq135501 109 3e-19 seq130359 109 3e-19 seq16780 104 1e-17 seq22360 91.5 8e-14 seq14168 89.7 3e-13 seq32600 84.2 1e-11 seq15401 82.4 4e-11 >seq290085 Length=908 Score = 122 bits (134), Expect = 5e-23 Identities = 83/93 (89%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| ||||||| || ||||||||| | | |||||||| ||||||||||||||||| Sbjct 299 AATTAAAAAAAAATTAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 356 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 357 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 389 >seq278466 Length=18341 Score = 120 bits (132), Expect = 2e-22 Identities = 88/102 (86%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||||| | | |||||||| | ||| ||||||||| | | |||||||| |||||||| Sbjct 8166 AAATATAAACGTTATAAAAAAATAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTC 8225 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| ||||||||||||||| |||| Sbjct 8226 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 8267 >seq174925 Length=12227 Score = 113 bits (124), Expect = 2e-20 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 6852 AAAAAATGAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 6795 Query 11504 GCTCTRACCAACTGAGCTAATGGGC 11528 ||||| ||||||||||||||||||| Sbjct 6794 GCTCTAACCAACTGAGCTAATGGGC 6770 >seq113256 Length=4214 Score = 111 bits (122), Expect = 8e-20 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| | | | ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 2757 ATAAAACAAAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 2698 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 2697 ACGCTCTAACCAACTGAGCTAATGGGCC 2670 >seq52653 Length=2997 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1855 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 1914 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 1915 CTGAGCTAATGGGCC 1929 >seq219607 Length=8365 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 6302 AAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 6243 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 6242 AACTGAGCTAATGGGCC 6226 >seq135502 Length=8696 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 490 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 549 Query 11516 TGAGCTAATGGGCCGTC 11532 |||||||||||||| || Sbjct 550 TGAGCTAATGGGCCATC 566 >seq135501 Length=1988 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 490 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 549 Query 11516 TGAGCTAATGGGCCGTC 11532 |||||||||||||| || Sbjct 550 TGAGCTAATGGGCCATC 566 >seq130359 Length=2486 Score = 109 bits (120), Expect = 3e-19 Identities = 77/88 (88%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 11445 AAAAATCAAATTG---GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| ||| || ||||||| | | |||||||| |||||||||||||||||||||| Sbjct 2049 AAAAATAAAAATGATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 2108 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 2109 ACGCTCTAACCAACTGAGCTAATGGGCC 2136 >seq16780 Length=1680 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||| | ||||||||||||||||||||||||||||| ||| Sbjct 74 AATTGGCCCATGCAGGTCTCGAACATGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 15 Query 11513 AACTGAGCTAATGG 11526 |||||||||||||| Sbjct 14 AACTGAGCTAATGG 1 >seq22360 Length=2057 Score = 91.5 bits (100), Expect = 8e-14 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1994 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2053 Query 11516 TGAG 11519 |||| Sbjct 2054 TGAG 2057 >seq14168 Length=796 Score = 89.7 bits (98), Expect = 3e-13 Identities = 72/87 (83%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| | || |||||| | | ||||| || ||||||| ||||||||||||| Sbjct 618 TAAAAAATAA---TGACCCATGCAGGTCTCGAATCTGCGACCTTTACGTTATTAGCACGG 562 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 561 CGCTCTAACCAACTGAGCTAATGGGCC 535 >seq32600 Length=351 Score = 84.2 bits (92), Expect = 1e-11 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 11482 ACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 351 ACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 304 >seq15401 Length=4401 Score = 82.4 bits (90), Expect = 4e-11 Identities = 46/47 (98%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 11483 CCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 4401 CCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 4355 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260505866837680