Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2459 145 1e-30 seq271151 140 5e-29 seq56436 140 5e-29 seq224618 134 2e-27 seq224829 129 9e-26 seq191581 125 1e-24 seq118515 125 1e-24 seq92942 123 4e-24 seq236569 118 2e-22 seq239837 114 2e-21 seq218870 111 2e-20 seq250910 107 3e-19 seq123753 105 1e-18 seq131795 84.2 3e-12 >seq2459 Length=8730 Score = 145 bits (160), Expect = 1e-30 Identities = 179/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||| || |||||||||||||| ||| | || |||||| | ||||| | Sbjct 1522 GAGATAACATTCAAGGTATTACCAAGCCAGCTATTCGTAGGCTTGCTCGTAGAGGTGGGG 1463 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||||||||| | ||||| || | ||||| ||| | |||||||| || Sbjct 1462 TGAAGCGTATTTCTGGATTGATTTATGAGGAAACTCGTGGGGTTCTTAAGATCTTTCTTG 1403 Query 16578 AGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | || || | ||||||| || || ||||| || || |||| | |||||||| || Sbjct 1402 AAAATGTGATTCGTGATGCTGTTACA-TATACTGAACATGCTAGGAGAAAGACTGTGACG 1344 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | || ||||| | || | ||||| | | |||| || |||||| || Sbjct 1343 GCTATGGATGTTGTTTATGCTCTTAAGAGGCAAGGAAGGACCCTTTACGGATTTGGAGGT 1284 Query 16697 TA 16698 || Sbjct 1283 TA 1282 >seq271151 Length=12518 Score = 140 bits (154), Expect = 5e-29 Identities = 190/265 (72%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || ||||||||||| || || || ||||| ||||| Sbjct 6471 GCAAAGCGTCACCGTAAGGTGCTCCGTGATAACATCCAGGGTATTACTAAGCCTGCTATT 6530 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||| | || ||||| |||||| | ||| || ||||||| |||| | Sbjct 6531 CGGCGTTTGGCTCGTAGAGGAGGAGTGAAGCGTATTAGTGGGCTGATCTATGAGGAGACT 6590 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||||||||||||||| | ||| || || | ||| || | || || ||| Sbjct 6591 CGTGGTGTTTTGAAGATCTTCTTGGAGAATGTGATTCGTGACTCTGTTACTTACACTGAG 6650 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||| | ||||| || || | |||||| | || |||||| | || | ||||| Sbjct 6651 CATGCTAGGAGGAAGACAGTGACTGCTATGGATGTTGTGTATGCACTCAAGAGACAAGGA 6710 Query 16673 CGTAAGATTTATGGTTTTGGAAGTT 16697 | | | |||||||||||| ||| Sbjct 6711 AGGACTTTGTATGGTTTTGGAGGTT 6735 >seq56436 Length=2767 Score = 140 bits (154), Expect = 5e-29 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||||||| ||||| ||||||||||| || | || |||||| | ||||| || Sbjct 188 GACAACATCCAAGGTATCACTAAGCCAGCTATTCGCAGGCTTGCTCGTAGGGGTGGTGTG 247 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| ||||||| | ||||||| |||| |||| || ||||||||||| | || Sbjct 248 AAGCGTATCTCTGGTCTCATCTATGAGGAGACCCGTGGAGTGTTGAAGATCTTTTTGGAG 307 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||| || || ||| || |||||||| | | ||||||||||| | Sbjct 308 AATGTGATTCGTGATTCTGTCACCTACACTGAGCACGCCAGGAGGAAGACTGTCACTGCT 367 Query 16640 ATGGATATCGTCTATGC 16656 |||||| | |||||||| Sbjct 368 ATGGATGTTGTCTATGC 384 >seq224618 Length=2312 Score = 134 bits (148), Expect = 2e-27 Identities = 178/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || |||||||| ||||| ||||| ||||| || || | ||| | |||||| | || Sbjct 1455 TCTCCGTGATAACATTCAAGGTATCACTAAGCCTGCAATTAGGCGTTTAGCTCGTAGAGG 1514 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||| |||||| || |||| | ||||||| |||| ||||| |||||||||||||| Sbjct 1515 AGGAGTGAAGCGTATCAGTGGACTAATCTATGAGGAGACTCGTGGAGTTTTGAAGATCTT 1574 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | ||| || || | |||| || | || || ||||| |||| | ||||| || Sbjct 1575 TTTGGAGAATGTGATTCGTGATTCTGTTACTTACACTGAGCATGCTAGGAGGAAGACGGT 1634 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | |||||| | || |||||| | || | ||||| | | ||||||| ||||| Sbjct 1635 CACTGCTATGGATGTTGTGTATGCACTCAAGAGGCAAGGAAGGACTCTTTATGGATTTGG 1694 Query 16693 AAGTTAA 16699 ||||| Sbjct 1695 TGGTTAA 1701 >seq224829 Length=3584 Score = 129 bits (142), Expect = 9e-26 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| || ||||| || ||||| ||||||||||| || | || |||||| | ||||| | Sbjct 2825 GAGACAATATCCAGGGTATCACTAAGCCAGCTATTCGCAGGCTTGCTCGTAGGGGTGGTG 2766 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| |||| || || ||||||| |||| |||| || ||||||||||| | Sbjct 2765 TGAAGCGTATCTCCGGTCTGATCTATGAGGAGACCCGTGGAGTATTGAAGATCTTTTTGG 2706 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||| || || ||| || |||||||| | | ||||||||||| Sbjct 2705 AGAATGTGATTCGTGACTCTGTCACCTACACTGAGCACGCCAGGAGGAAGACTGTCACTG 2646 Query 16638 CCATGGATATCGTCTATGC 16656 | |||||| | |||||||| Sbjct 2645 CGATGGATGTTGTCTATGC 2627 >seq191581 Length=2222 Score = 125 bits (138), Expect = 1e-24 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| |||||||| || ||||||||||| || | || |||||| | ||||| | Sbjct 2170 GAGACAACATTCAAGGAATTACAAAGCCAGCTATTCGAAGACTCGCTCGTAGAGGTGGTG 2111 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||||| ||| | || ||||| | ||||| |||||||||||||| | Sbjct 2110 TGAAGCGTATATCTGGGTTGATTTACGAAGAAACTCGTGGGGTTTTGAAGATCTTTTTGG 2051 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | || || | |||| | | || || |||||||||| | ||||| || || Sbjct 2050 AAAATGTGATTCGTGATTCCGTTACTTACACAGAGCACGCTAGGAGAAAGACGGTTACTG 1991 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || |||||| | || | ||||| | | |||| || ||||| ||| Sbjct 1990 CTATGGATGTTGTTTATGCACTTAAGAGACAAGGAAGGACCCTTTACGGATTTGGGGGTT 1931 Query 16698 AA 16699 || Sbjct 1930 AA 1929 >seq118515 Length=11867 Score = 125 bits (138), Expect = 1e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| || ||||| || ||||| ||||||||||| || | || |||||| | ||||| | Sbjct 47 GAGACAATATCCAGGGTATCACTAAGCCAGCTATTCGCAGGCTTGCTCGTAGGGGTGGTG 106 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| ||||||| | ||||||| |||| |||| || ||||||||||| | Sbjct 107 TGAAGCGTATCTCTGGTCTAATCTATGAGGAGACCCGTGGAGTGTTGAAGATCTTTTTGG 166 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | |||| || | ||| || |||||||| | | |||||||| || Sbjct 167 AGAATGTGATTCGTGATTCTGTAACCTACACTGAGCACGCCAGGAGGAAGACTGTTACTG 226 Query 16638 CCATGGATATCGTCTATGC 16656 | |||||| | |||||||| Sbjct 227 CTATGGATGTTGTCTATGC 245 >seq92942 Length=7813 Score = 123 bits (136), Expect = 4e-24 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| |||||||| || ||||||||||| || | || |||||| | ||||| | Sbjct 7761 GAGACAACATTCAAGGAATTACAAAGCCAGCTATTCGAAGACTCGCTCGTAGAGGTGGTG 7702 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||||| ||| | || ||||||| ||||| |||| |||||||||| | Sbjct 7701 TGAAGCGTATTTCTGGGTTGATTTACGAAGAGACTCGTGGTGTTCTGAAGATCTTTTTGG 7642 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | || || | |||| | | || || |||||||||| | ||||| || || Sbjct 7641 AAAATGTAATTCGTGATTCCGTGACATACACAGAGCACGCTAGGAGAAAGACGGTTACTG 7582 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || ||||| | || | ||||| | | |||| || ||||| ||| Sbjct 7581 CTATGGATGTTGTTTATGCGCTTAAGAGGCAAGGAAGGACCCTTTACGGATTTGGGGGTT 7522 Query 16698 A 16698 | Sbjct 7521 A 7521 >seq236569 Length=8730 Score = 118 bits (130), Expect = 2e-22 Identities = 187/268 (70%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | ||| || |||||||| || |||||||| ||||| || || Sbjct 1835 GCAAAACGTCATCGGAAAGTTCTCCGTGATAACATTCAGGGAATCACTAAGCCGGCGATA 1894 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | |||| | | |||||||| ||| | || |||||| |||||||||| | Sbjct 1895 AGGAGGTTGGCGAGAAGAGGTGGAGTGAAGAGAATCAGTGGATTAATCTATGAAGAAACG 1954 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||||||||||||||| | ||| || || | |||| || | ||||| || Sbjct 1955 AGAGGTGTTTTGAAGATCTTTTTGGAGAATGTGATTCGTGATTCTGTGACTTATACTGAA 2014 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||| | |||||||| || | |||||| | || ||||| ||||| | ||||| Sbjct 2015 CATGCTAGGAGAAAGACTGTTACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGA 2074 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | ||||||| ||||| ||| || Sbjct 2075 AGGACTCTTTATGGGTTTGGTGGTTGAT 2102 >seq239837 Length=823 Score = 114 bits (126), Expect = 2e-21 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 16482 AGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCT 16541 |||||||||| || | || |||||| | ||||| || |||||| ||||||| | ||| Sbjct 1 AGCCAGCTATTCGCAGGCTTGCTCGTAGGGGTGGTGTGAAGCGTATCTCTGGTCTCATCT 60 Query 16542 ATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCC 16601 |||| |||| |||| ||| ||||||||||| | ||| || || | ||| || || Sbjct 61 ATGAGGAGACCCGTGGTGTGTTGAAGATCTTTTTGGAGAATGTGATTCGTGACTCTGTCA 120 Query 16602 ACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGA 16661 ||| || |||||||| | | |||||||| || | |||||| |||||||||| | | Sbjct 121 CCTACACTGAGCACGCCAGGAGGAAGACTGTAACTGCTATGGATGTCGTCTATGCTCTTA 180 Query 16662 AACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || | | | ||||| ||||| ||||| Sbjct 181 AGAGACAGGGAAGGACTCTCTATGGATTTGGCGGTTAA 218 >seq218870 Length=1888 Score = 111 bits (122), Expect = 2e-20 Identities = 148/205 (72%), Gaps = 7/205 (3%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| || ||||| ||||||||||| | | || |||||| | ||||| | Sbjct 280 GAGACAACATCCAGGGTATCACTAAGCCAGCTATTCACAGGCTTGCTCGTAGGGGTGGTG 221 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT----TCGTGATGTTTTGAAGATCTTC 16573 | |||| | ||||||| | ||||||| ||||| |||| || ||||||||||| Sbjct 220 TGAAGCATATCTCTGGTCTCATCTATGAGGAGATCGACCCGTGGAGTGTTGAAGATCTTT 161 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || |||||| || || ||| || ||||| || | | |||||| || Sbjct 160 TTGGAGAATGTGATTCATGATTCTGTCACCTACACTGAGCATGCCAGGAGGAAGACTATC 101 Query 16634 ACCTCCATGGATATCGTCTATGCAT 16658 || | |||||| ||||||| || Sbjct 100 ACTACTATGGAT---GTCTATGGAT 79 >seq250910 Length=11046 Score = 107 bits (118), Expect = 3e-19 Identities = 184/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | ||||| || |||||||| || ||||||||||| ||||| Sbjct 10884 GCAAAACGTCATCGTAAGGTGCTTCGTGACAACATCCAGGGTATCACCAAGCCTGCTATT 10825 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | |||| | | |||||||| ||| | || ||| ||| | |||||||||| Sbjct 10824 AGGAGGTTGGCAAGAAGAGGTGGAGTGAAGAGAATCAGTGGGTTGATTTATGAAGAGACA 10765 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | |||| | |||||||| | ||| ||| || | |||| || | ||| || || Sbjct 10764 AGAGGTGTTCTTAAGATCTTTTTGGAGAACGTGATTCGTGATTCTGTTACCTACACAGAA 10705 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||| | |||||||| || | |||||| | || ||||| ||||| | ||||| Sbjct 10704 CATGCTAGGAGGAAGACTGTTACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGA 10645 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | ||||| || || ||||| Sbjct 10644 AGAACTCTCTATGGGTTCGGTGGTTAA 10618 >seq123753 Length=346 Score = 105 bits (116), Expect = 1e-18 Identities = 147/205 (72%), Gaps = 7/205 (3%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||| ||||||||||| | | || |||||| | ||||| | Sbjct 309 GAGACAACATCCAGGGAATCACTAAGCCAGCTATTCACAGGCTTGCTCGTAGGGGTGGTG 250 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT----TCGTGATGTTTTGAAGATCTTC 16573 | |||||| ||||||| | ||||||| ||||| |||| || ||||||||||| Sbjct 249 TGAAGCGTATCTCTGGTCTCATCTATGAGGAGATCGACCCGTGGAGTATTGAAGATCTTT 190 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | |||| | || ||| || |||| | | | ||||||||| Sbjct 189 TTGGAGAATGTGATTCGTGATTCCGTCACCTACACTCAGCATTCCAGGAGGAAGACTGTC 130 Query 16634 ACCTCCATGGATATCGTCTATGCAT 16658 || | |||||| ||||||| || Sbjct 129 ACTACTATGGAT---GTCTATGGAT 108 >seq131795 Length=4638 Score = 84.2 bits (92), Expect = 3e-12 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | ||| || |||||||| || |||||||| || || || || Sbjct 4090 GCAAAGCGTCACCGGAAAGTTCTCCGTGATAACATTCAGGGAATCACTAAACCGGCGATA 4031 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | | || | | || ||||| ||| | || ||| ||| |||||||||| | Sbjct 4030 AGGAGGTTAGCGAGAAGAGGCGGAGTGAAGAGAATCAGTGGGTTGATCTATGAAGAAACA 3971 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | |||||||||||| || | ||| || || | |||| || | || || || Sbjct 3970 AGAGGTGTTTTGAAGATATTTTTGGAGAATGTGATTCGTGATTCTGTTACTTACACTGAA 3911 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || |||| | || ||||| || | |||||| | || ||||| ||||| | ||||| Sbjct 3910 CATGCTAGGAGAAAAACTGTTACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGG 3852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78792514561740