Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq67946 111 2e-19 >seq67946 Length=21248 Score = 111 bits (122), Expect = 2e-19 Identities = 300/453 (66%), Gaps = 12/453 (3%) Strand=Plus/Minus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||| ||||| || | |||||| || || || ||||| ||||| |||| || || Sbjct 3997 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 3938 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 ||||| |||| |||||||| | || || | || || | | |||||| | || Sbjct 3937 CTCCATCCAATCGAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAA 3878 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 ||||| || |||||||| ||||| |||| || ||| || || | |||||| || | || Sbjct 3877 CAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCACCAG 3818 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTC---AACAAT 21420 ||||||||| | || || ||||||| || || || |||||| Sbjct 3817 AGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 3758 Query 21421 TATATTTATTA--TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACAT 21478 | | | | |||| | || | || | || ||| | | |||||| Sbjct 3757 TCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCA-AACTGT----AAAGCAAACAC 3703 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 ||||||||||| ||||||||||| || || ||||| ||||| || || ||||| || Sbjct 3702 GCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCA 3643 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAAAGAAAAT 21597 |||||||| || | ||||| ||||||||||| || || | || ||| |||||||| Sbjct 3642 GGCATTAACCCCCGTTTTTTCAACCAAAATATCGA-ACAGAAGCTTCCGCTGAAGAAAAT 3584 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 || ||||| |||||| || || || || || Sbjct 3583 CCCTTCAACACAAGCAAAAGCCACCAAACGCTC 3551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529845136383200