Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq218976 82.4 7e-11 seq29975 82.4 7e-11 >seq218976 Length=24853 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || |||||||| | || | || || Sbjct 10864 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCT 10923 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | || ||| ||||| ||||| |||||||| || || || Sbjct 10924 TCCGACACCATCGACAATGTGAAAGCCAAGATCCAGGACAAGGAAGGGATTCCCCCAGAC 10983 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | | |||| || ||| || || || || |||| | | | | |||||| Sbjct 10984 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 11043 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||| ||||||| || || Sbjct 11044 AACATCCAGAAGGAGTCCACTCTCCATCTCGTGCT 11078 >seq29975 Length=3370 Score = 82.4 bits (90), Expect = 7e-11 Identities = 121/168 (72%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 26830 ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAAC 26889 ||||||| | | || ||| ||||||| ||||||||||| || || | ||||||| Sbjct 2466 ACACCATTAACAATGTTAAAGCAAAGATTGAAGACAAAGAAGGAATTCCCTCAGATCAAC 2407 Query 26890 AAAGACTCATTTACGGCGGCAAACAACTCGAAGATGAT-AGAAACGTCAGC-GACTATAA 26947 ||||| | | | || || |||||| | | |||||| | | || | || || || || Sbjct 2406 AAAGATTAGTATTTGGTGGAAAACAATTTAAGGATGATCATACACTT--GCTGATTACAA 2349 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| || ||||| || ||||| ||| |||| ||| | ||||| Sbjct 2348 TATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAGTCTTTGTGGAGG 2301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476812489489600