Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq250116 105 6e-18 seq142480 91.5 1e-13 >seq250116 Length=2524 Score = 105 bits (116), Expect = 6e-18 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||| | || ||||| | || || | || |||||| Sbjct 403 ATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGTTCT 344 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| |||||| ||||| |||||||| ||||| ||||| Sbjct 343 GACACCATTGATAATGTCAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAG 284 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTATA 24168 ||||||||||| | | || || || || ||||||| | ||| || | || ||||| | Sbjct 283 CAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTT--GCTGATTACA 226 Query 24169 ACATTCAAAAAGAATCTACAATTCAT 24194 |||| |||||||| ||||| ||||| Sbjct 225 ACATCCAAAAAGAGTCTACCCTTCAT 200 >seq142480 Length=7342 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 24079 TTACC--GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCA 24136 ||||| || ||||||||||||||||| ||||| ||||||||||||| | || || || Sbjct 5073 TTACCAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACA 5014 Query 24137 ACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCA 24193 | | ||||||| |||| | | ||||| |||||||| |||||||| || |||| Sbjct 5013 ATTGGAAGATGGTAGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCA 4957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428315944722900