Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq218976 107 2e-18 seq30399 104 2e-17 seq256924 100 3e-16 seq260619 96.9 3e-15 seq260618 93.3 4e-14 seq45869 91.5 1e-13 seq261322 89.7 5e-13 >seq218976 Length=24853 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | ||| | || |||||||| || |||||||| ||| Sbjct 11093 CCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 11034 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || ||| | || |||||||||||||| || || Sbjct 11033 AGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGA 10974 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || || | | || | || |||| ||||| | Sbjct 10973 ATCCCTTCCTTGTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCGGAAGACTCAACC 10914 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || ||||| ||||| ||||| |||||||| Sbjct 10913 TCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 10867 >seq30399 Length=1829 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | |||||||||||| || |||||||| ||| Sbjct 1655 CCACCACGTAGACGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCA 1596 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| | || || | ||||||||| || || Sbjct 1595 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGA 1536 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||| | | || | || |||| | || | Sbjct 1535 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCAATGGTGTCGGAGCTTTCCACC 1476 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| || || || || ||||||||||| Sbjct 1475 TCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAAATCTGCAT 1429 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | ||| ||||| ||||| | ||| |||||||| || ||||||||||| ||| Sbjct 971 CCACCACGTAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCT 912 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || |||||| | |||||| || ||| |||| | | ||||| ||||| || Sbjct 911 -AGAGTACGTCCGTCCTCCAACTGCTTTCCAGCGAAGATAAGCCTTTGCTGATCCGGGGG 853 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| || || ||| || ||| | | || | ||||| | || | Sbjct 852 AATTCCTTCCTTATCCTGGATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCAC 793 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || ||||| |||||||| || || |||||||| Sbjct 792 CTCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 745 >seq256924 Length=5511 Score = 100 bits (110), Expect = 3e-16 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 ||||||| ||||| || || | || || ||| |||| || || |||||| ||| Sbjct 4518 AGCACTAGATGTAGAGTTGATTTTTTCTGGATGCTGTAGTCCGCCAAGGTGCGGCCATCC 4459 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || |||||||| || || | || | | |||||||| |||||||||||||||||||| Sbjct 4458 TCGAGCTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGATTCCTTCTTTGTC- 4400 Query 131143 GTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 || | | || | ||| | || | ||||| | || | |||| || | |||| ||| Sbjct 4399 TTGTATCTTGGCCTTAGCATTGTCGATAGTATTGCTGAATTCGACTTCCAGAGTAATGGT 4340 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCT 131230 ||||| || ||||||||| ||||| |||| Sbjct 4339 TTTACTGG-TAGAGTTTTCACGAATATCT 4312 >seq260619 Length=5677 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | ||| || ||||| || ||||||||||| Sbjct 193 CCACCACGAAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCA 252 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | |||||| ||||||||||| || |||| || | |||||||| || || Sbjct 253 AGGGTCCTGCCGTCCTCAAGCTGCTTGCCCGCAAAGATCAACCTTTGCTGGTCTGGGGGA 312 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | || | || || | | || | Sbjct 313 ATGCCTTCCTTGTCTTGGATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACC 372 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || | |||||| |||||||| |||||| Sbjct 373 TCAAGGGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCATG 420 Score = 86.0 bits (94), Expect = 6e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GC 131065 |||||| || | ||| ||||| || || | || ||||| || |||||||||||||| || Sbjct 420 GCCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCAGC 479 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | | || || ||| || |||||||| ||||| |||| | | ||||||||| || | Sbjct 480 T-AGAGTACGACCGTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGG 538 Query 131126 GGATTCCTTCTTTGTC 131141 | || ||||| ||||| Sbjct 539 GAATGCCTTCCTTGTC 554 >seq260618 Length=7988 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||| || || || | ||| |||||||| || ||||||||||| Sbjct 395 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 336 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| || ||||| || || |||| || | ||||||||| || || Sbjct 335 AGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 276 Query 131128 ATTCCTTCTTTGTC 131141 || ||||||||||| Sbjct 275 ATACCTTCTTTGTC 262 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || || || | ||| |||||||| || ||||||||||| Sbjct 167 CCACCGCGAAGACGAAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 108 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | |||||| ||||||||||| || |||| || | |||||||| || || Sbjct 107 AGGGTCCTGCCGTCCTCAAGCTGCTTGCCCGCAAAGATCAACCTTTGCTGGTCTGGGGGA 48 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 47 ATGCCTTCCTTGTC 34 >seq45869 Length=5042 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/193 (73%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 131045 CCTTT-TGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 ||||| |||||||||||||| ||| | || || || || |||||||| || ||| | Sbjct 4374 CCTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAA 4432 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCT 131161 ||| || |||||||||||||| || || ||||| ||||| ||| | | || |||| | Sbjct 4433 GATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTC-TTGAATCTTAGCTTTGACAT 4491 Query 131162 GCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTA 131221 || | ||| ||| | || || | || | || | || || || || |||||||| | Sbjct 4492 TGTCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCA 4551 Query 131222 CGAAAATCTGCAT 131234 |||| |||||||| Sbjct 4552 CGAAGATCTGCAT 4564 >seq261322 Length=6793 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | ||| || || | || | ||| |||||||| || |||||||| || ||| Sbjct 4351 CCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 4410 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || | ||||| |||||||| || ||| | || || ||||||||||| || || Sbjct 4411 AGCGTTCGGCCA-TCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGG 4469 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| || || ||| | | || | || || | ||||| | Sbjct 4470 AATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTAC 4529 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || || || || || || || || |||||||| Sbjct 4530 CTCCAAGGTAATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470188588531200