Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq30399 87.8 1e-12 seq260618 82.4 6e-11 >seq30399 Length=1829 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || || | || || || |||||||| || |||||||||||||| Sbjct 1655 CCACCACGTAGACGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCA 1596 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || || || || |||| | || ||| ||||| || Sbjct 1595 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGA 1536 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | |||||| | ||| Sbjct 1535 ATTCCCTCCTTGTCCTGGATCTTAGC--CTTAACATTATCAATGGTGTCGGAGCTTTCCA 1478 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| |||||||| || || || |||||||||||||| Sbjct 1477 CCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAAATCTGCAT 1429 >seq260618 Length=7988 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||| || ||||||||||| ||||||||||| |||| || | | || || | ||| Sbjct 827 TGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGTTGC 768 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || || | ||| |||||| || | ||||| ||||| ||||| Sbjct 767 TTCCCTGCAAAGATCAGTCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGAATTTTA 708 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | || || |||| |||| || |||||||| || ||| Sbjct 707 GCCTTCACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTC 648 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | || || |||||||||||||| Sbjct 647 AAGGTCTTCACAAAAATCTGCAT 625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403561575248200