Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq260618 113 4e-20 seq218976 100 2e-16 seq269538 96.9 3e-15 seq183807 89.7 4e-13 seq227670 86.0 5e-12 seq256924 84.2 2e-11 >seq260618 Length=7988 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||| || || | || || | || ||||| || Sbjct 396 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTC 455 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | ||| | || | ||| |||||||| || || ||||| |||| Sbjct 456 CGACACCATTGACAACGTAAAGGCCAAGATTCAG-GACAAAGAGGGTATCCCACCAGACC 514 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | |||||||| ||||| || || ||||||| | || | | |||||||| Sbjct 515 AGCAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACA 574 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||| || ||||| || || ||| | ||| | ||||| || ||||| Sbjct 575 ATATTCAGAAGGAATCAACCCTTCATCTTGTGTTGAGGCTCAGGGGAGG 623 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || | ||||| | || ||||| ||| Sbjct 169 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 228 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || | || |||| ||| ||||||||||| |||||||| ||| Sbjct 229 GACACCATTGA--CAATGTTAAGGCCAAAATTCAG-GACAAAGAAGGTATTCCACCAGAC 285 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || |||||||| || ||| | || || | || || | | |||||| Sbjct 286 CAGCAGAGGTTGATCTTTGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCTGATTAC 345 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || || || || || || || || || | || |||| |||| Sbjct 346 AACATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGGAA 397 >seq218976 Length=24853 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || | ||||| | || || ||||| || Sbjct 10867 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCTTCC 10926 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || |||| || | || ||||| ||||||||||| || ||| Sbjct 10927 GACACCATCGA--CAATGTGAAAGCCAAGATCCAG-GACAAGGAAGGGATTCCCCCAGAC 10983 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||| ||||| || || | || |||| ||| ||| | | ||| ||| Sbjct 10984 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 11043 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || ||| | ||||| Sbjct 11044 AACATCCAGAAGGAGTCCACTCTCCATCTCGTGCT 11078 >seq269538 Length=12246 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||| || || | || ||| | || || ||| || Sbjct 213 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 272 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || ||||||| | ||| ||||| || || ||||| || ||| Sbjct 273 GATACCATTGA--CAATGTGAAAGCAAAGATTCA-AGACAAGGAGGGTATTCCCCCAGAC 329 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || ||||| || |||||| | || || | | ||| | | || ||| Sbjct 330 CAACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTTGCAGACTAC 389 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || ||| | ||| | | | |||||||| Sbjct 390 AACATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 439 >seq183807 Length=6005 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTA-AAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||| |||||||| ||||| | ||||| || ||||||| | || || ||| || Sbjct 5427 ATGCAGATATTTGTTTAAGACGCTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGCTC 5486 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||| || | || |||| || | ||| ||||| ||||| ||||| || || Sbjct 5487 TGACACTATTGA--TAATGTAAAAGCTAAGATTCA-AGACAAGGAAGGCATTCCTCCAGA 5543 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| || | || ||||| || ||||| | ||||||| | || || | ||||| Sbjct 5544 TCAGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCAAACAGTTGCTGATTA 5603 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| || ||| | || || || || ||| | || || | ||| | || |||| Sbjct 5604 CAACATCCAAGACGAGTCTAC-CTCCATCTTGTCCTCCGTCTACGTGGTGGAA 5655 >seq227670 Length=5094 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | ||||| || || Sbjct 60 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCC 119 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || ||||| | |||| ||| || || ||||||||||| || ||||| Sbjct 120 GATACTATTGACAATGTGAAGGCCAAAATTCAG-GATAAGGAAGGGATTCCTCCAGACCA 178 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || ||| | |||| ||| | || |||| | || ||| || ||||| Sbjct 179 GCAGAGACTGATCTTT--CCGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTACAA 236 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| ||||| ||||| ||||| | || || Sbjct 237 TATTCAGAAAGAGTCCACCTTACATCTTGTTCT 269 >seq256924 Length=5511 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/216 (70%), Gaps = 10/216 (5%) Strand=Plus/Plus Query 25001 GCAA-ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTG 25059 |||| ||||| || || ||| | ||| ||||| |||| || | ||||| || | || | Sbjct 4309 GCAAGATATTCGTGAAAACTCT-ACCAGTAAAACCATTACTCTGGAAGTCGAAT--TCAG 4365 Query 25060 --ACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 | |||||||| || || ||| || || ||||||||||| || || || ||| Sbjct 4366 CAATACTATCGA--CAATGCTAAGGCCAAGATACAAGACAAAGAAGGAATCCCTCCAGAC 4423 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | |||||||| || || || | || |||| ||||| ||| || ||| Sbjct 4424 CAGCAAAGGCTGATTTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCTTGGCGGACTAC 4483 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 | || || ||| |||| || |||||| |||||||| Sbjct 4484 AGCATCCAGAAAAAATCAACTCTACATCTAGTGCTA 4519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431695163221700