Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq67946 210 2e-49 seq11118 89.7 6e-13 seq273866 86.0 7e-12 seq124638 86.0 7e-12 seq232897 82.4 8e-11 seq127693 82.4 8e-11 >seq67946 Length=21248 Score = 210 bits (232), Expect = 2e-49 Identities = 592/894 (66%), Gaps = 15/894 (2%) Strand=Plus/Minus Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| || || ||||||||| | || ||||||||||| ||||| |||| ||| ||| Sbjct 3997 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 3938 Query 92862 ATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919 | || | | || |||||||| || || || ||| ||| ||| | | ||| Sbjct 3937 CTCCATCCAATCGAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAA 3878 Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 ||||| ||||||||||| |||||||| | | ||||||||| | ||||||||| | || Sbjct 3877 CAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCACCAG 3818 Query 92980 ACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038 | | ||| || ||||| || || ||| || | || || | || || ||| | | Sbjct 3817 A-GCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAACAA 3759 Query 93039 TTTCTATTACTCTACTATTTGGTGGTTTTTGTACG-ACATAATTGTACATTAAGCACGCA 93097 || | | |||| || | || || || | | || |||| | || |||||| Sbjct 3758 TTCCCCTGACTCG-CTCCTCAGTTAGCTTCGTCCTTAGCAAACTGTAAAGCAAACACGCA 3700 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 || || || ||||||||||||| ||| || |||||||| ||| ||||| || || Sbjct 3699 AAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGGC 3640 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217 | | || ||||| || | ||||||||| ||| || || || || || || ||| Sbjct 3639 ATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCCT 3580 Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCAT 93277 || || ||||| ||||| | ||| || || ||| || |||| | | ||||| Sbjct 3579 TCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTTTCGGACCCATCG---ATCCAA 3523 Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 | ||||| | || || || | || |||||| | ||| || || || || | Sbjct 3522 CGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGCACGGAACAAT 3463 Query 93338 TAATCTCGCT-CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | ||| | |||| ||||| ||||| | || | | || | ||||| || || Sbjct 3462 TTG-CTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATCTCGGA 3404 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||||| |||||| || || |||||||| || |||||| | ||| || | | ||| || Sbjct 3403 ATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCGGCAACCTGGAC 3344 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 |||| || || | |||| || || || || || || || || |||||||| Sbjct 3343 ATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAAAA 3284 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAG 93576 || | | ||| | || ||||| | ||| | | | || || ||||| | | || Sbjct 3283 GGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGT-GACGAG 3225 Query 93577 -ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635 ||| | || |||||||||||||| | ||||| || ||||| ||||| ||||||| Sbjct 3224 TATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCATGGCTTTCTTGTACA 3165 Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGATTAGGGTTA 93688 | ||||| || | | |||| |||||||| || || ||| || |||| |||||| Sbjct 3164 TTTCCCAAATCTGTGGATACTGAATTGGGAACAT-ACAGAATCGATCTGGGTTA 3112 >seq11118 Length=3148 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/95 (82%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||| Sbjct 4 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTAAGAGAGC 63 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| ||||| ||| ||||| Sbjct 64 GTGGGTTCAAATCCCACTTCTGAC--ATTTTTATT 96 >seq273866 Length=5688 Score = 86.0 bits (94), Expect = 7e-12 Identities = 81/101 (80%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| ||||||||| |||||||||||||||||||| | |||||| || | ||||||| Sbjct 4252 CAGTTTGGCCGAGCGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 4309 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGA-ATTTTTG 126367 ||| || |||||| ||| || ||| || | ||| ||||||| Sbjct 4310 TTCAAATCCCACAGCTGTCATATTTTTTTGGGACATTTTTG 4350 >seq124638 Length=7617 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 7121 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 7178 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 7179 GCGTGGGTTCAAATCCCACTTCTGACA 7205 >seq232897 Length=7542 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 1862 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 1805 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 1804 GCGTGGGTTCAAATCCCACTTCTGACA 1778 >seq127693 Length=1877 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 1257 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 1314 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 1315 TTCAAATCCCACAGCTGTCAATTT 1338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554708672223200