Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq250116 123 2e-23 seq45869 118 9e-22 seq269538 116 3e-21 seq260619 116 3e-21 seq260618 111 1e-19 seq30399 109 5e-19 seq183807 102 7e-17 seq29975 102 7e-17 seq164539 96.9 3e-15 >seq250116 Length=2524 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || |||||||| || | ||||| || || |||||||||| || || | Sbjct 405 AGATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGTT 346 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | || || ||||| || |||||||||||||| || ||||| || |||| Sbjct 345 CTGACACCATTGATAATGTCAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATC 286 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | || || ||||| || |||||| | || ||| ||| || | | ||||||| Sbjct 285 AGCAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACA 226 Query 22397 ACATTCAAAAAGAATCCACCATACAT 22422 |||| |||||||| || ||| | ||| Sbjct 225 ACATCCAAAAAGAGTCTACCCTTCAT 200 Score = 113 bits (124), Expect = 4e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| |||||||||||| | ||||| || || | |||||||| || || | | | Sbjct 176 GATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTC 117 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || ||||| ||||||||||||||||| |||||||| || || || Sbjct 116 AGACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCA 57 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCAC 22382 || | || || ||||| || |||||| | || ||| ||| || Sbjct 56 GCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAAC 12 >seq45869 Length=5042 Score = 118 bits (130), Expect = 9e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || |||||| | || || || ||| |||| |||||||| ||| | Sbjct 4567 AAAATGCAGATCTTCGTGAAAACTCTTACGGGGAAGACGATCACGCTTGAAGTTGAATCG 4508 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| || | ||| || ||||| || |||||||||||||| ||||||||||| || Sbjct 4507 AGCGACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCACCGGAC 4448 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || | || || ||||| || ||| | || ||| || || | | |||||| Sbjct 4447 CAGCAGCGATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGACGTACTCTAGCTGATTAC 4388 Query 22396 AACATTCAAAAAG 22408 |||||||| |||| Sbjct 4387 AACATTCAGAAAG 4375 >seq269538 Length=12246 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||||| || || || || | || | || || || | | Sbjct 213 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 272 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | ||| ||| ||||||||||||||||||||||| || || ||| Sbjct 273 GATACCATTGACAATGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAA 332 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || ||||| | ||||| | || | | || |||||| Sbjct 333 CAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTTGCAGACTACAAC 392 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||| | || ||||| ||| | ||||| Sbjct 393 ATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 439 >seq260619 Length=5677 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || |||||||| || || || || |||| ||||| || |||| | | Sbjct 419 ATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTCT 360 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || ||||||||||| || ||||| || || || Sbjct 359 GACACCATTGACAATGTTAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 300 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| ||||| ||| | ||||| | | ||| | | ||||||||| Sbjct 299 CAAAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAAC 240 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || ||||| ||| | || || || Sbjct 239 ATCCAGAAGGAATCAACCCTTCACTTGGT 211 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||||| || || || || |||| ||||| || |||| | || Sbjct 191 ATGCAAATTTTTGTGAAGACTTTGACTGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 132 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || ||||||||||| || ||||| || || || Sbjct 131 GACACCATTGACAATGTTAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 72 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| ||||| ||| | ||||| | | ||| | | ||||||||| Sbjct 71 CAAAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAAC 12 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 11 ATCCAGAAGGA 1 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 |||| ||||||| || ||||||||||| | || || || || |||| ||||| ||||| Sbjct 654 TGTACAGATGCAGATATTTGTTAAAACCCTCACTGGAAAGACTATCACCCTTGAGGTGGA 595 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 || | | || ||| | ||| || | ||| || || || |||||||| || ||||| || Sbjct 594 AAGCTCAGACACCATTGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCC 535 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || || | || || ||||| || || ||| | || || || || | | || Sbjct 534 AGACCAGCAGAGGCTGATCTTTGCAGGAAAGCAGCTTGAAGACGGTCGTACTCTAGCTGA 475 Query 22392 TTACAACATTCAAAAAGAATCCAC 22415 |||||||||||| ||||| || || Sbjct 474 TTACAACATTCAGAAAGAGTCAAC 451 >seq260618 Length=7988 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| ||||| || || || || || || || |||| ||||| ||||||| | Sbjct 168 GATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTC 227 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | ||| || | || |||||||| ||||| || ||||||||||| || || Sbjct 228 TGACACCATTGACAATGTTAAGGCCAAAATTCAGGACAAAGAAGGTATTCCACCAGACCA 287 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| || || | ||||| ||| ||| | | |||||||| Sbjct 288 GCAGAGGTTGATCTTTGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCTGATTACAA 347 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||| || || || || ||| | || || || |||| Sbjct 348 CATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCG 383 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || || || || ||||| | ||| | || ||||| | | Sbjct 625 ATGCAGATTTTTGTGAAGACCTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCT 684 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || |||||||| ||||||||||| || ||||| || || Sbjct 685 GATACCATTGACAATGTGAAGGCTAAAATTCAGGACAAGGAGGGAATCCCACCGGACCAG 744 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || || || | || ||| | || | | || |||||| Sbjct 745 CAGAGACTGATCTTTGCAGGGAAGCAACTTGAAGATGGAAGGACTCTGGCGGACTACAAC 804 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| || || || Sbjct 805 ATCCAAAAGGAGTCTAC 821 >seq30399 Length=1829 Score = 109 bits (120), Expect = 5e-19 Identities = 161/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 22201 TTTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACT 22260 |||||| |||| | ||||||| || ||||| |||||| | ||||| || || |||| Sbjct 728 TTTTATGAATTT-TGCAGATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACTATCACC 786 Query 22261 CTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAG 22320 || || ||||||| | ||||| | ||| | | || || || || || ||||| Sbjct 787 CTAGAGGTGGAAAGTTCTGATACAATCGACAACGTTAAGGCTAAGATCCAGGATAAGGAA 846 Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 || ||||| || ||||| ||| | ||||| || || || || ||||| ||||| || Sbjct 847 GGAATTCCCCCGGATCAGCAAAGGCTTATCTTCGCTGGAAAGCAGTTGGAGGACGGACGT 906 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 || | | ||||||||||| || || || |||||| | ||||| || Sbjct 907 ACTCTAGCTGATTACAACATCCAGAAGGAGTCCACCCTCCATTTGGT 953 Score = 102 bits (112), Expect = 7e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| ||||| |||| || || || || | | || Sbjct 1657 ATGCAAATCTTTGTGAAGACCCTTACCGGGAAAACCATCACCCTGGAGGTTGAGAGCTCC 1716 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || |||||||||||||||||||| || || || Sbjct 1717 GACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAG 1776 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCAC 22382 || | | || ||||| ||||| ||| | |||||| |||||| Sbjct 1777 CAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGCCGCAC 1820 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||||||||| || | ||||| || || ||||| | || ||||||| | || Sbjct 1429 ATGCAGATTTTTGTTAAGACCCTCACCGGAAAGACCATCACTTTGGAGGTGGAAAGCTCC 1488 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || ||||||||||| ||||| || || || Sbjct 1489 GACACCATTGATAATGTTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 1548 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || || ||| | ||||| ||||||| | |||| |||||| Sbjct 1549 CAGAGGTTGATTTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAAC 1608 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 1609 ATCCAGAAGGAGTCGACC 1626 >seq183807 Length=6005 Score = 102 bits (112), Expect = 7e-17 Identities = 144/201 (72%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAA-ACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||| || |||||| || || | ||||| || || |||||||||| || || | | Sbjct 5425 AGATGCAGATATTTGTTTAAGACGCTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGC 5484 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | ||| || |||||||||||||| || ||||| || ||| Sbjct 5485 TCTGACACTATTGATAATGTAAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGAT 5544 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||| || |||||| | || ||| || || || | |||||| Sbjct 5545 CAGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCAAACAGTTGCTGATTAC 5604 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| ||| | || || ||| Sbjct 5605 AACATCCAAGACGAGTCTACC 5625 Score = 98.7 bits (108), Expect = 8e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 22235 AAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATA 22294 ||||| | ||||| || || | |||||||| || || | | | || ||| | || || Sbjct 5659 AAACTCTGACCGGAAAGACTATAACTCTTGAGGTTGAGAGCTCAGACACCATTGATAATG 5718 Query 22295 TCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTG 22354 ||||| |||||| |||||||||| |||||| | || || || || | || || |||| Sbjct 5719 TCAAAGCTAAAATTGAAGACAAGGAAGGTATTTCCCCAGACCAGCAGAGGCTGATCTTTG 5778 Query 22355 CCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCA 22414 | || ||| || | || ||| ||| || | | ||||||||||| ||||| || |||| Sbjct 5779 CTGGGAAATAGCTTGAAGATGGCCGAACACTTACTGATTACAACATCCAAAAGGAGTCCA 5838 Query 22415 CC 22416 || Sbjct 5839 CC 5840 >seq29975 Length=3370 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 || |||||||||| |||||||||||| | | || || || | ||||| || ||| | | Sbjct 2532 TACAGATGCAAATCTTTGTTAAAACTCTCATTGGAAAGACCATTACTCTGGATGTGAAGA 2473 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 || | ||| | || || | ||| ||| ||| ||||||| || || ||||| | | Sbjct 2472 GTTCCAACACCATTAACAATGTTAAAGCAAAGATTGAAGACAAAGAAGGAATTCCCTCAG 2413 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 |||||||| | | |||||| || ||||| || ||||| | | || | | |||| Sbjct 2412 ATCAACAAAGATTAGTATTTGGTGGAAAACAATTTAAGGATGATCATACACTTGCTGATT 2353 Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 |||| |||||||| || || || || ||| | || ||| | | | ||||||| Sbjct 2352 ACAATATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAGTCTTTGTGGAGGTT 2299 >seq164539 Length=4213 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || ||||| || || ||||| | || ||||| | | Sbjct 4167 ATGCAGATCTTTGTGAAGACCTTGACCGGGAAGACCATCACTTTGGAGGTGGAGAGTTCT 4108 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | ||| || ||||| ||||||||||| || ||||| || || Sbjct 4107 GACACCATCGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGGATCCCACCAGACCAG 4048 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || || ||| | |||||| ||||||| | | || ||||| Sbjct 4047 CAGAGGTTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCTGACTACAAT 3988 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 || || || || |||||| | || | || | || | || || |||||| Sbjct 3987 ATCCAGAAGGAGTCCACCCTGCACCTTGTCCTCCGTCTCCGTGGTGGTTTT 3937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418146409806700