Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq260618 96.9 2e-15 seq269538 89.7 4e-13 >seq260618 Length=7988 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | || || || || ||||| || |||||| | || |||| | | Sbjct 396 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTC 455 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | | | ||| || ||| || ||||||||| | || | |||| Sbjct 456 CGACACCATTGACAACGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCAGACCA 515 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || | || ||||||||||| || | |||||| || || | ||||||||||| Sbjct 516 GCAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAA 575 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||||||||| || |||||| | || || Sbjct 576 TATTCAGAAGGAATCAACCCTTCATCTTGTGTT 608 >seq269538 Length=12246 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || || || || || ||||| |||| || || Sbjct 213 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 272 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || ||| ||| || || |||||| | || | ||||| Sbjct 273 GATACCATTGACAATGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAA 332 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | | ||||||||||| |||||||| || || | ||| | || || ||||| Sbjct 333 CAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTTGCAGACTACAAC 392 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| || ||||| ||| |||| || ||||| ||||||| Sbjct 393 ATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 439 Score = 82.4 bits (90), Expect = 5e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || |||||| | ||| | |||| |||||| | ||||||||||| || ||||| || Sbjct 78 GACAAGGAGGGTATTCCTCCAGACCAGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAG 137 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 22036 ||| || || |||| |||||||| |||||||| ||||| || || || Sbjct 138 GATGGAAGGACGTTGGCAGATTACAACATTCAGAAAGAATCAACCCTGCA 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356775338749720