Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq45869 116 3e-21 seq260619 113 4e-20 seq250116 113 4e-20 seq183807 95.1 1e-14 seq269538 93.3 4e-14 seq261322 93.3 4e-14 seq29975 86.0 5e-12 seq260618 82.4 6e-11 seq30399 82.4 6e-11 >seq45869 Length=5042 Score = 116 bits (128), Expect = 3e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 114193 CTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 |||| |||||||||||||| ||| | |||||| |||||| || || || || ||| || Sbjct 4375 CTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 4433 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || | ||||| |||||||| ||||| ||||| ||||| |||||| ||| | | Sbjct 4434 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 4493 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| |||||| | ||||| || || | || | ||| || || || |||||||| || Sbjct 4494 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 4553 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 4554 AAGATCTGCAT 4564 >seq260619 Length=5677 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 || || ||||| || | | || || || | || || ||||| |||||||||||||| Sbjct 418 ATGCCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCA 477 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| | ||||||| |||||||| || || || || |||| || | ||| ||||| || Sbjct 478 GCT-AGAGTACGACCGTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGG 536 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||||||||| ||||| ||||| ||| | | |||| |||||| | | ||| Sbjct 537 GGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTGTCAATGGTGTCTGAGCTTTC 596 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || || ||||| ||||| |||||||| Sbjct 597 CACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 647 >seq250116 Length=2524 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | ||| | ||||| |||||||| ||||||||||| Sbjct 174 ATCCCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 233 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||| ||||| ||||| |||| || | ||| || || ||| Sbjct 234 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGA 293 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| ||| | | |||| |||||| | ||| Sbjct 294 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCG 353 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || ||||| || || || ||||| |||||||| Sbjct 354 ACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 403 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 ||||||||| ||||| ||||| |||| || | ||| ||||| || ||||| ||||| || Sbjct 20 ATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTT 79 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| ||| || ||| | | || | |||||| | | ||||| || | || | Sbjct 80 GTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTAT 139 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||||||||||||| ||||| || ||||| Sbjct 140 AGTCTTTCCGGTCAGAGTTTTAACAAAGATTTGCAT 175 >seq183807 Length=6005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | ||| | ||||| || | ||| ||||||||||| Sbjct 5656 ATTCCACCACGTAGACGGAGGACAAGATGGAG-GTAGACTCGTCTTGGATGTTGTAATCA 5598 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | ||||||||| ||||| ||||| |||| || | ||| || || ||| Sbjct 5597 GCAACTGTTTGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGA 5538 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| ||||| | |||| ||||| | | ||| Sbjct 5537 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTTACATTATCAATAGTGTCAGAGCTCTCG 5478 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGT-TTTTACAAAAATCTGCAT 114382 || || | || | || || ||||| || || || ||||| |||||||| Sbjct 5477 ACCTCAAGAGTGATGGTCTTTCCGGTGAGCGTCTTAAACAAATATCTGCAT 5427 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || ||||| ||||||||||| Sbjct 5872 ATACCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCA 5813 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | | || || ||||||||| | ||| ||||| |||| || | ||| ||||| || Sbjct 5812 GTAAGTGTTCGGCCATCTTCAAGCTATTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 5753 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 | ||| ||||| ||||| |||| || ||| | | |||| |||||| | | || Sbjct 5752 GAAATACCTTCCTTGTCTTCAATTTTAGCTTTGACATTATCAATGGTGTCTGAGCTCTCA 5693 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTT 114366 || || | || | || || ||||||||||||| Sbjct 5692 ACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTT 5659 >seq269538 Length=12246 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| || | ||| | || || || || || |||||||| || | ||| | || Sbjct 425 CAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCGTC 366 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||||||||||||||||| |||| | |||||||||||| || ||||| || || ||||| Sbjct 365 CTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTC 306 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||||||| ||| | | |||| ||| || | || || |||| || | || Sbjct 305 TTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTAATTGT 246 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || |||| ||| || |||||||| |||||| Sbjct 245 CTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 212 >seq261322 Length=6793 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 || || || || || |||||||| || ||| | || || ||| || || || ||||| Sbjct 4381 GTGGACTCCTTCTGGATGTTGTAGTCAGCT-AGCGTTCGGCCATCCTCGAGCTGCTTACC 4439 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| | || | ||||| ||||| || ||||||||||| ||||| |||||| || Sbjct 4440 GGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTT 4499 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| |||||| | || || || |||| ||| | || ||||| ||||| || Sbjct 4500 AACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGT 4559 Query 114365 TTTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 4560 CTTCACAAAGATCTGCAT 4577 >seq29975 Length=3370 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/234 (70%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| |||| || ||||| || | ||| || ||||| || |||||||| |||||||| Sbjct 2300 ACCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGC 2359 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| || ||| | || |||||| ||| | | | | | ||||| || | || Sbjct 2360 AAGTGTATGATCATCCTTAAATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGGG 2419 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC--TGTTCAACGGTGTCGGTGGA---- 114328 ||| ||||||||||| ||||| |||| |||| | |||| || ||||| |||| Sbjct 2420 AATTCCTTCTTTGTCTTCAATC-TTTGCTTTAACATTGTT-AATGGTGT---TGGAACTC 2474 Query 114329 TTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || |||| || | || || || | |||||||| ||||| || ||||| Sbjct 2475 TTC-ACATCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 2527 >seq260618 Length=7988 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209 |||| ||| ||||| || | | || | || | ||||| || ||||| |||||||| Sbjct 857 CAAAAACCACCACGGAGACGGAGGACAAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAG 798 Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269 || || ||| | |||||||||||| || || || |||| || | ||| |||||| Sbjct 797 TCCGCCAGAGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAAGATCAGTCTCTGCTGGTCC 738 Query 114270 GGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGAT 114329 || || || || || ||||| ||| || || | | |||| ||| || | Sbjct 737 GGTGGGATTCCCTCCTTGTCCTGAATTTTAGCCTTCACATTGTCAATGGTATCAGAACTC 678 Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||| || | ||||| || |||| || || |||||||||||||| Sbjct 677 TCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTCTTCACAAAAATCTGCAT 625 >seq30399 Length=1829 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| |||||||| | | || | || | || || || || || |||||||| ||| Sbjct 1658 ATACCACCACGTAGACGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 1599 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || || || ||||||||| | || | | ||| ||||| || Sbjct 1598 GCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGG 1539 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | |||| |||||||| | ||| Sbjct 1538 GGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCAATGGTGTCGGAGCTTTCC 1479 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || ||||| || || || |||||||||||||| Sbjct 1478 ACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAAATCTGCAT 1429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418551278438160