Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq45869 143 6e-29 seq218976 136 9e-27 seq30399 125 2e-23 seq227670 107 5e-18 seq208872 104 5e-17 seq250116 102 2e-16 seq260619 100 7e-16 seq164539 98.7 2e-15 seq256924 84.2 5e-11 seq123982 84.2 5e-11 >seq45869 Length=5042 Score = 143 bits (158), Expect = 6e-29 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| || || || || || || || || ||||| ||||| | || ||||| ||||||| Sbjct 4375 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 4434 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 ||| ||||| || ||| || ||||| || || || || || ||||| || || | Sbjct 4435 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 4494 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | |||| ||||||||||| ||||| ||||||||||||||||| || ||||| || |||| Sbjct 4495 CAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 4554 Query 288464 ATATCTGCATTATG 288477 | ||||||||| || Sbjct 4555 AGATCTGCATTTTG 4568 >seq218976 Length=24853 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || |||||||| | ||| || || ||||| || |||||||| Sbjct 11093 CCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 11034 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || ||||| ||||| |||| |||||| || |||||| Sbjct 11033 AGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGG---TCTGGG 10977 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || |||||||| || |||||||| || || || | ||| || || Sbjct 10976 GGAATCCCTTCCTTGTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCGGAAGACTCA 10917 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||||||||| || || || || ||||| |||||||| Sbjct 10916 ACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 10867 >seq30399 Length=1829 Score = 125 bits (138), Expect = 2e-23 Identities = 169/233 (73%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | ||| || || ||||| || ||||| || Sbjct 1199 CCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 1140 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| || || |||||||| ||||||| | ||| || |||||| Sbjct 1139 AGGGTGCGGCCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGG---TCTGGG 1083 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || ||||| ||||||||||| || || || ||||| || || | || ||| | Sbjct 1082 GGAATGCCTTCCTTATCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCT---T 1026 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || |||||||| || || |||||||| ||||| |||||||| Sbjct 1025 TCGACCTCAAGGGTAATCGTCTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 973 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||| | || || || ||||| || ||||| || Sbjct 1427 CCACCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 1368 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || ||||| |||||||||| | ||| || |||||| Sbjct 1367 AGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGG---TCTGGG 1311 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| ||||||||||| || || |||||||| || || | ||| ||| Sbjct 1310 GGGATCCCTTCCTTATCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCC 1251 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| ||||| |||||||| ||||| |||||||| Sbjct 1250 ACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 1201 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | ||| | ||| || || ||||| || || || || Sbjct 971 CCACCACGTAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCT 912 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || |||||||| || || || ||||| |||||||| || | || ||| || ||| Sbjct 911 AGAGTACGTCCGTCCTCCAACTGCTTTCCAGCGAAGATAAGCCTTTGCTGA---TCCGGG 855 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| ||||||||||| || || || ||||| || || | ||| ||| Sbjct 854 GGAATTCCTTCCTTATCCTGGATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCC 795 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||| ||||| || || || |||||||| Sbjct 794 ACCTCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 745 >seq227670 Length=5094 Score = 107 bits (118), Expect = 5e-18 Identities = 174/245 (71%), Gaps = 14/245 (6%) Strand=Plus/Minus Query 288235 ATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATA 288294 ||||| | | |||||| ||||| || || |||||||||| || ||||| |||||| Sbjct 988 ATTCAGAAGTTTCCACCACGGAGCCTGAGGACGAGATGAAGAGTAGACTCTTTGTGGATA 929 Query 288295 TTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGT 288354 || ||||| || || |||| || || || | || || || || ||||| || | | || Sbjct 928 TTGTAGTCTGCAAGGATGCGACCATCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCCGT 869 Query 288355 TGAGAATCTGG--GATTCCTT-CTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAA 288411 ||| ||||| || ||||| | || ||||| || | |||||||| | | ||| | Sbjct 868 TGA---TCTGGTGGAATCCTTTCCTTGTCCTGTATCCTTGCTTTCACAGT--CAGTAGTA 814 Query 288412 TC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 || |||| | || || | ||||| |||||||| ||||||||||| || || ||| Sbjct 813 TCTGAGCTC---TTAACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATC 757 Query 288469 TGCAT 288473 ||||| Sbjct 756 TGCAT 752 >seq208872 Length=2849 Score = 104 bits (114), Expect = 5e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || ||||| || || ||||| || || || || | |||||| ||||| ||||| Sbjct 2341 CCTTCCTTGTCCTGTATCTTAGCTTTAACATTATCGATGGTATCGCTGGATTCAACTTCC 2400 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| || ||||||||||| || ||||||||||||||| Sbjct 2401 AGCGTTATCGTTTTACCGGTCAGAGTTTTCACGAATATCTGCATT 2445 >seq250116 Length=2524 Score = 102 bits (112), Expect = 2e-16 Identities = 164/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||||| || ||||||||||| || || || || Sbjct 177 CCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCA 236 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || || ||||| | ||||| || || |||||||| | ||| || |||| Sbjct 237 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTG---ATCTGGA 293 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || || ||||| || || || || || ||||| || || || || | || ||| Sbjct 294 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTC--- 350 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| ||||| || ||||| || ||||||||||| Sbjct 351 TCGACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 403 >seq260619 Length=5677 Score = 100 bits (110), Expect = 7e-16 Identities = 142/197 (72%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || || || || || || || |||||||| | || |||||||| ||| Sbjct 457 TCTTTCTGAATGTTGTAATCAGCTAGAGTACGACCGTCTTCAAGCTGCTTTCCTGCAAAG 516 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || |||||| || ||||| || |||||||| || ||||| || Sbjct 517 ATCAGCCTCTGCTGG---TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACA 573 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || ||| ||| || || || ||||| ||||| || || || || Sbjct 574 TTGTCAATGGTGTCTGAGCT---TTCCACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTT 630 Query 288457 TTGACGAATATCTGCAT 288473 || || ||||||||||| Sbjct 631 TTAACAAATATCTGCAT 647 >seq164539 Length=4213 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| || || |||||||| ||||| || Sbjct 3941 CCACCACGGAGACGGAGGACAAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCA 4000 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||| |||| | ||| || |||| Sbjct 4001 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGTGGG 4060 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCT 288423 || || || || ||||| || || |||||||| || || || | || ||| || Sbjct 4061 ATCCCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCGATGGTGTCAGAACTC---TCC 4117 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | ||||| ||||||||||||| ||||| || || ||||||||| Sbjct 4118 ACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAGATCTGCATT 4168 >seq256924 Length=5511 Score = 84.2 bits (92), Expect = 5e-11 Identities = 156/225 (69%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 288248 CACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGA 288307 |||| | |||||| | || ||||| | || || ||| ||||| | ||||| || | Sbjct 4531 CACCACAAAGTCTA-GCACTAGATGTAGAGTTGATTTTTTCTGGATGCTGTAGTCCGCCA 4473 Query 288308 GCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG-- 288365 ||||| || || || | || || || || || ||||| | || || ||||| Sbjct 4472 AGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGCCTTTGCTGG---TCTGGAG 4416 Query 288366 -GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 |||||||||||| || || || || || || | || || |||| || ||| |||| | Sbjct 4415 GGATTCCTTCTTTGTCTTGTATCTTGGCCTTAGCATTGTCGATAGTATTGCTGAATTCGA 4356 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCT 288469 |||| || || || || || | ||| ||||| || |||||||||| Sbjct 4355 CTTCCAGAGTAATGGTTTTACTGGT-AGAGTTTTCACGAATATCT 4312 >seq123982 Length=30799 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 72702 AGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGAT 72761 || |||||||| | ||| ||| || ||||||||||||||| |||||||||| ||||| Sbjct 5547 AGGGATTGGGGTTTTGCTGGGGACTATGTAGAAGCAATGTGGATGATGCTGCAGCAAGAG 5488 Query 72762 ACTCCGGATGACTATGTGATTGCAAC 72787 | |||||||| |||||| | ||||| Sbjct 5487 AAGCCGGATGATTATGTGGTAGCAAC 5462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1174981353924040