Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq45869 125 8e-24 seq261322 107 2e-18 seq164539 98.7 1e-15 seq269538 95.1 1e-14 seq68649 93.3 5e-14 seq218976 91.5 2e-13 seq260619 89.7 6e-13 seq260618 89.7 6e-13 seq30399 89.7 6e-13 seq6742 82.4 8e-11 >seq45869 Length=5042 Score = 125 bits (138), Expect = 8e-24 Identities = 147/195 (75%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 42019 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| ||||||||||| ||||| || | || || |||||||| || ||||| Sbjct 4374 CCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 4433 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | |||||||||||| | ||| | | ||||||| | ||| | || | ||||| | Sbjct 4434 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATT 4492 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||||||||||| || || | |||||| || || ||||| || || || || Sbjct 4493 GTCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCAC 4552 Query 42197 AAAGATTTGCATTTT 42211 ||||| |||||||| Sbjct 4553 GAAGATCTGCATTTT 4567 >seq261322 Length=6793 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || || || | || || ||||||||||| ||||| Sbjct 4386 CTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAA 4445 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | |||||||||||| | ||| | || ||||||| | ||| | || | | | | | Sbjct 4446 AATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGT-CTTGAATCTTAGCCTTAACAT 4504 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || || || || | || ||||| |||||||| || ||||| | Sbjct 4505 TGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGTCTTCA 4564 Query 42196 CAAAGATTTGCATTTT 42211 ||||||| |||||||| Sbjct 4565 CAAAGATCTGCATTTT 4580 >seq164539 Length=4213 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| ||| |||||| || |||||||| ||||| || || || | || || |||||| Sbjct 3965 TGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGC 4024 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 ||||||||||| || | | ||||||||| | ||| | | |||||||||| ||| | || Sbjct 4025 TTACCAGCGAAAATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC-TGAATCTT 4083 Query 42126 TG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCC 42181 | ||| | | | | ||||| ||| ||||| || | |||||||| || || Sbjct 4084 AGCTTTCACATTGTCGATGGTGTCAGAACTC---TCCACCTCCAAAGTGATGGTCTTCCC 4140 Query 42182 CGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||| |||||||| |||||| Sbjct 4141 GGTCAAGGTCTTCACAAAGATCTGCATT 4168 >seq269538 Length=12246 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| ||||||||||||| ||| | || |||||| || || ||||| || || Sbjct 439 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 380 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||||| | |||| || || || |||||||| || || | ||||| ||||| | || Sbjct 379 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 320 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTT 42130 | | |||||||| | ||| | |||| || Sbjct 319 ATACCCTCCTTGT-CTTGAATCTTTGCTT 292 >seq68649 Length=3576 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| ||||| || || || | || || |||||||| || ||||| Sbjct 2486 TCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGCTTTCCCGCGAAA 2427 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | | ||||||||| | ||| | || ||||||||| ||| | || | | | | | Sbjct 2426 ATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCC-TGAATCTTAGCCTTAACATT 2368 Query 42138 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | || | | || || || || || | || || || ||||||||||| ||||| || Sbjct 2367 GTCAATGGTATCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCAC 2308 Query 42197 AAAGATTTGCATTTT 42211 |||||| |||||||| Sbjct 2307 AAAGATCTGCATTTT 2293 >seq218976 Length=24853 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||| | ||| | ||| |||||| || || ||||| || || ||||| || | Sbjct 11082 ACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACC 11023 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || ||||| || | ||||||||||| | || | | ||||| Sbjct 11022 ATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTT 10963 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| || ||| | | | | |||||| || || || || | ||||| Sbjct 10962 GTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGAT 10903 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 || || |||||||| || || || ||||| ||||| ||| Sbjct 10902 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTC 10863 >seq260619 Length=5677 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | || ||| || ||||| ||||||||||| ||||| || | Sbjct 432 ACGGAGCACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCAGCTAGAGTACGACC 491 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || || || || || | ||||||||| | || | || ||||| Sbjct 492 GTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTT 551 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 |||| ||| || ||| | | | | ||||| ||| |||||| || | || Sbjct 552 GTCCTGGATCTTGGCTTTAACATTGTCAATGGTGTCTGAGCT---TTCCACCTCAAGGGT 608 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || || || || || ||||| || ||||| Sbjct 609 GATAGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 647 >seq260618 Length=7988 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | ||||| ||||| || | || |||||| || || ||||||||||| Sbjct 395 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 336 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || || ||||| || || || || | | ||||||||| | ||| Sbjct 335 AGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 276 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | | || |||||| ||| |||| | | | | | | | | ||||| |||||| Sbjct 275 ATACCTTCTTTGTCC-TGAATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCAC 217 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| || ||||| || | ||||| |||||||||||||| Sbjct 216 CTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 169 >seq30399 Length=1829 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || ||||||||||||||||| Sbjct 1620 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 1561 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | | ||||||||| | || | | |||||||||| ||| || || | | Sbjct 1560 AATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 1501 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| |||||| || | |||||||| || || || || ||||| || Sbjct 1500 ATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAAC 1441 Query 42197 AAAGATTTGCAT 42208 ||| || ||||| Sbjct 1440 AAAAATCTGCAT 1429 >seq6742 Length=4968 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 42021 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 42080 ||||||||||| ||||| ||||| || ||| | || || ||||| |||||||| || || Sbjct 3643 TTTTGAATATTATAATCCGCCAGTGTACGCCCATCTTCAAGCTGTTTACCAGCAAAGATC 3702 Query 42081 AGTCGCTGCTGGTCGGCTGG 42100 |||||||||||||| | ||| Sbjct 3703 AGTCGCTGCTGGTCCGGTGG 3722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541113418331200