Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10-
06] 309,180 sequences; 688,247,059 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq45869 125 8e-24
seq261322 107 2e-18
seq164539 98.7 1e-15
seq269538 95.1 1e-14
seq68649 93.3 5e-14
seq218976 91.5 2e-13
seq260619 89.7 6e-13
seq260618 89.7 6e-13
seq30399 89.7 6e-13
seq6742 82.4 8e-11
>seq45869
Length=5042
Score = 125 bits (138), Expect = 8e-24
Identities = 147/195 (75%), Gaps = 3/195 (2%)
Strand=Plus/Plus
Query 42019 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| ||||| ||||||||||| ||||| || | || || |||||||| || |||||
Sbjct 4374 CCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 4433
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136
|| | |||||||||||| | ||| | | ||||||| | ||| | || | ||||| |
Sbjct 4434 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATT 4492
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | |||||||||||||| || || | |||||| || || ||||| || || || ||
Sbjct 4493 GTCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCAC 4552
Query 42197 AAAGATTTGCATTTT 42211
||||| ||||||||
Sbjct 4553 GAAGATCTGCATTTT 4567
>seq261322
Length=6793
Score = 107 bits (118), Expect = 2e-18
Identities = 143/196 (73%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| ||||| || || || | || || ||||||||||| |||||
Sbjct 4386 CTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAA 4445
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| | |||||||||||| | ||| | || ||||||| | ||| | || | | | | |
Sbjct 4446 AATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGT-CTTGAATCTTAGCCTTAACAT 4504
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | ||||| || || || || | || ||||| |||||||| || ||||| |
Sbjct 4505 TGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGTCTTCA 4564
Query 42196 CAAAGATTTGCATTTT 42211
||||||| ||||||||
Sbjct 4565 CAAAGATCTGCATTTT 4580
>seq164539
Length=4213
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/208 (72%), Gaps = 8/208 (4%)
Strand=Plus/Plus
Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065
|||| ||| |||||| || |||||||| ||||| || || || | || || ||||||
Sbjct 3965 TGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGC 4024
Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125
||||||||||| || | | ||||||||| | ||| | | |||||||||| ||| | ||
Sbjct 4025 TTACCAGCGAAAATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC-TGAATCTT 4083
Query 42126 TG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCC 42181
| ||| | | | | ||||| ||| ||||| || | |||||||| || ||
Sbjct 4084 AGCTTTCACATTGTCGATGGTGTCAGAACTC---TCCACCTCCAAAGTGATGGTCTTCCC 4140
Query 42182 CGTTAGCGTCTTTACAAAGATTTGCATT 42209
|| | ||||| |||||||| ||||||
Sbjct 4141 GGTCAAGGTCTTCACAAAGATCTGCATT 4168
>seq269538
Length=12246
Score = 95.1 bits (104), Expect = 1e-14
Identities = 111/149 (74%), Gaps = 1/149 (1%)
Strand=Plus/Minus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|||||||| ||||||||||||| ||| | || |||||| || || ||||| || ||
Sbjct 439 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 380
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
||||||| | |||| || || || |||||||| || || | ||||| ||||| | ||
Sbjct 379 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 320
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTT 42130
| | |||||||| | ||| | |||| ||
Sbjct 319 ATACCCTCCTTGT-CTTGAATCTTTGCTT 292
>seq68649
Length=3576
Score = 93.3 bits (102), Expect = 5e-14
Identities = 139/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || || ||||| ||||| || || || | || || |||||||| || |||||
Sbjct 2486 TCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGCTTTCCCGCGAAA 2427
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
|| | | ||||||||| | ||| | || ||||||||| ||| | || | | | | |
Sbjct 2426 ATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCC-TGAATCTTAGCCTTAACATT 2368
Query 42138 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| || | | || || || || || | || || || ||||||||||| ||||| ||
Sbjct 2367 GTCAATGGTATCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCAC 2308
Query 42197 AAAGATTTGCATTTT 42211
|||||| ||||||||
Sbjct 2307 AAAGATCTGCATTTT 2293
>seq218976
Length=24853
Score = 91.5 bits (100), Expect = 2e-13
Identities = 152/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | ||| | ||| | ||| |||||| || || ||||| || || ||||| || |
Sbjct 11082 ACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACC 11023
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||| || ||||| || | ||||||||||| | || | | |||||
Sbjct 11022 ATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTT 10963
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
|||| ||| || ||| | | | | |||||| || || || || | |||||
Sbjct 10962 GTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGAT 10903
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212
|| || |||||||| || || || ||||| ||||| |||
Sbjct 10902 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTC 10863
>seq260619
Length=5677
Score = 89.7 bits (98), Expect = 6e-13
Identities = 152/219 (69%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | |||||| || | || ||| || ||||| ||||||||||| ||||| || |
Sbjct 432 ACGGAGCACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCAGCTAGAGTACGACC 491
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || |||||||| || || || || || | ||||||||| | || | || |||||
Sbjct 492 GTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTT 551
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169
|||| ||| || ||| | | | | ||||| ||| |||||| || | ||
Sbjct 552 GTCCTGGATCTTGGCTTTAACATTGTCAATGGTGTCTGAGCT---TTCCACCTCAAGGGT 608
Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| || || || || || || || ||||| || |||||
Sbjct 609 GATAGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 647
>seq260618
Length=7988
Score = 89.7 bits (98), Expect = 6e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|| |||| | ||||| ||||| || | || |||||| || || |||||||||||
Sbjct 395 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 336
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
|| || || |||| || || ||||| || || || || | | ||||||||| | |||
Sbjct 335 AGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 276
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160
| | || |||||| ||| |||| | | | | | | | | ||||| ||||||
Sbjct 275 ATACCTTCTTTGTCC-TGAATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCAC 217
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | ||||| || ||||| || | ||||| ||||||||||||||
Sbjct 216 CTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 169
>seq30399
Length=1829
Score = 89.7 bits (98), Expect = 6e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || || || || || |||| || |||||||||||||||||
Sbjct 1620 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 1561
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| | | ||||||||| | || | | |||||||||| ||| || || | |
Sbjct 1560 AATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 1501
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | |||||| |||||| || | |||||||| || || || || ||||| ||
Sbjct 1500 ATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAAC 1441
Query 42197 AAAGATTTGCAT 42208
||| || |||||
Sbjct 1440 AAAAATCTGCAT 1429
>seq6742
Length=4968
Score = 82.4 bits (90), Expect = 8e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 42021 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 42080
||||||||||| ||||| ||||| || ||| | || || ||||| |||||||| || ||
Sbjct 3643 TTTTGAATATTATAATCCGCCAGTGTACGCCCATCTTCAAGCTGTTTACCAGCAAAGATC 3702
Query 42081 AGTCGCTGCTGGTCGGCTGG 42100
|||||||||||||| | |||
Sbjct 3703 AGTCGCTGCTGGTCCGGTGG 3722
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 541113418331200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |