Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq269538 131 2e-25 seq260618 105 7e-18 seq218976 102 8e-17 seq45869 100 3e-16 seq261322 91.5 1e-13 seq260619 91.5 1e-13 >seq269538 Length=12246 Score = 131 bits (144), Expect = 2e-25 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||||||| || | ||| | |||||||||| || ||||||||||| Sbjct 439 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 380 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | |||||| ||||||||||| | | |||| | |||||||||||| || || Sbjct 379 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 320 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | |||| ||| |||| || | ||| || | ||| | Sbjct 319 ATACCCTCCTTGTC-TTGAATCTTTGCTTTCACATTG-TCAATGGTATCTGAACTCTCAA 262 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || || ||||||| ||| || |||||||| |||||| Sbjct 261 CCTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 212 >seq260618 Length=7988 Score = 105 bits (116), Expect = 7e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||||| || || || | | |||||||||| || |||||||| || Sbjct 395 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 336 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||| ||||| || |||| | |||| | | ||| ||||| || || Sbjct 335 AGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 276 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||||||||| ||| |||| | ||| |||| || | |||||| | |||| Sbjct 275 ATACCTTCTTTGTC-CTGAATTTTGGCCTTAACATTG-TCAATGGTGTCAGAACTTTCCA 218 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||||| || || ||||| || ||||| Sbjct 217 CCTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 169 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| || ||| | || || ||||| || || | | Sbjct 818 GACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGTTGCTTCCCTGCA 759 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| || | ||| |||||||| || || || || ||||| ||| |||| | || Sbjct 758 AAGATCAGTCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTC-CTGAATTTTAGCCTTCAC 700 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||| || | ||||||||| | || | ||||| ||||||| || | Sbjct 699 ATTG-TCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTCT 641 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||||||||| Sbjct 640 TCACAAAAATCTGCAT 625 >seq218976 Length=24853 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | |||||| ||||| || || || |||| Sbjct 11060 GACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTCAAGCTGCTTTCCGGCG 11001 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || | |||||| ||||| || || || ||||| ||||| ||| || ||| | | Sbjct 11000 AAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTCACA 10941 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||||| ||||| | || | ||| || || || || ||||| Sbjct 10940 TTG-TCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTT 10882 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 10881 CACGAAGATCTGCAT 10867 >seq45869 Length=5042 Score = 100 bits (110), Expect = 3e-16 Identities = 143/194 (74%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 138425 CCTTT-TGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 ||||| ||||||||||| || ||| | |||||| || ||||| || || |||| | Sbjct 4374 CCTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAA 4432 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--AAT 138540 ||| | ||||| |||||||| || |||||||| ||||| ||| | || | ||| || Sbjct 4433 GATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTC-TTGAATCTTAGCTTTGACAT 4491 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| |||| || || || | ||| | ||| || || || |||||||| Sbjct 4492 TG-TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTC 4550 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 4551 ACGAAGATCTGCAT 4564 >seq261322 Length=6793 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || ||||||||||| ||| | || || |||||||| || ||||||| Sbjct 4384 GACTCCTTCTGGATGTTGTAGTCAGCT-AGCGTTCGGCCATCCTCGAGCTGCTTACCGGC 4442 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | || | ||||| ||||| || || || ||||| ||||| ||| | || | ||| Sbjct 4443 GAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTC-TTGAATCTTAGCCTTAA 4501 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||| | ||||| ||||| | || | || || || ||||| || Sbjct 4502 CATTG-TCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGTC 4560 Query 138598 TTTACAAAAATCTGCAT 138614 || ||||| |||||||| Sbjct 4561 TTCACAAAGATCTGCAT 4577 >seq260619 Length=5677 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCG 138477 ||||||| || ||||||||||| || ||| | |||||| ||| || || || || || Sbjct 452 TTGACTCTTTCTGAATGTTGTAATCAGCT-AGAGTACGACCGTCTTCAAGCTGCTTTCCT 510 Query 138478 GAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT 138537 | | |||| || | ||| ||||| || || || ||||| ||||| ||| || ||| Sbjct 511 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTA 570 Query 138538 A-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | |||| || | |||||| | |||||||| | || | || || ||||| || || Sbjct 571 ACATTG-TCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATAGTCTTTCCAGTGAGGGT 629 Query 138597 TTTTACAAAAATCTGCAT 138614 ||| ||||| |||||||| Sbjct 630 TTTAACAAATATCTGCAT 647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494344469889600