Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq250116 129 6e-25 seq164539 102 8e-17 seq260618 95.1 1e-14 seq30399 95.1 1e-14 seq269538 93.3 4e-14 seq261322 89.7 5e-13 seq45869 89.7 5e-13 >seq250116 Length=2524 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| |||| || | || | ||| | |||||||||||||| || |||||||| | Sbjct 177 CCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCA 236 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || |||||||| ||||| |||||| || ||||||||| ||||| Sbjct 237 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGA 296 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||| | ||| | | || |||| | || | |||||| | ||||||||| Sbjct 297 ATGCCTTCCTTGT-CTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCGAC 355 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || ||||| || || || ||||| |||||||| Sbjct 356 CTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 403 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || |||||||| ||||| |||||| | |||||| || || || || || ||||| Sbjct 20 ATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTT 79 Query 127018 GTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCA 127076 ||| ||| ||| |||| || | |||| |||||| | |||||||| || | || | Sbjct 80 GTCT-TGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTA 138 Query 127077 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || |||||||||||||| ||||| || ||||| Sbjct 139 TAGTCTTTCCGGTCAGAGTTTTAACAAAGATTTGCAT 175 >seq164539 Length=4213 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || |||||||| || | | ||||| ||| || ||||| || ||| Sbjct 3971 GTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCA 4030 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 ||| | ||||| | |||||| || || || || |||||||||||| ||| | | || || Sbjct 4031 GCGAAAATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC-TGAATCTTAGCTTT 4089 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | |||| |||||| | |||||| || || | || | || || ||||||| || Sbjct 4090 CACATTGTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCGGTCAAGGT 4149 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 4150 CTTCACAAAGATCTGCAT 4167 >seq260618 Length=7988 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| ||||| || ||||| || ||| || | ||| || || || || || Sbjct 821 GTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGTTGCTTCCCT 762 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| || |||||| || || || || |||||||||||| ||||| ||| Sbjct 761 GCAAAGATCAGTCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGAATTTTAGCCTTC 702 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| || | |||||| || || | || | ||||| || |||| || Sbjct 701 ACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTC 642 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 641 TTCACAAAAATCTGCAT 625 >seq30399 Length=1829 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | | ||||| || || ||||| || ||| Sbjct 1625 GTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCA 1566 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||| | |||||| || || || || |||||||||||| ||| || ||| Sbjct 1565 GCGAAAATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTA 1506 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | || || || || | || | || || ||||| || || Sbjct 1505 ACATTATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTC 1446 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 1445 TTAACAAAAATCTGCAT 1429 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 126950 GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATG 127009 ||||| ||| || ||||| || ||||| | ||||| | |||||| || || || || Sbjct 1820 GTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATA 1761 Query 127010 CCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCG 127069 ||||||||||| ||| || ||||| | || | |||||| | ||||| || || Sbjct 1760 CCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCC 1701 Query 127070 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||| | ||||| ||||| || || || ||||| || ||||| Sbjct 1700 AGGGTGATGGTTTTCCCGGTAAGGGTCTTCACAAAGATTTGCAT 1657 >seq269538 Length=12246 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || |||||||||| ||| | || ||||| || || || ||||| || | | || | Sbjct 430 AAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTC 371 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 || || || ||||| ||||| ||||||| ||||| || || || || || |||||| Sbjct 370 CCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCC 311 Query 127016 TTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 |||| | ||| | | ||| || | | || | ||| || | |||||| || || | || Sbjct 310 TTGT-CTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGT 252 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || || || |||| ||| || |||||||| |||||| Sbjct 251 AATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 212 Score = 89.7 bits (98), Expect = 5e-13 Identities = 128/177 (72%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| ||||| |||||||| ||| ||| | ||| || || || |||||| Sbjct 181 GTTGATTCTTTCTGAATGTTGTAATCTGCCAACGTCCTTCCATCCTCAAGTTGCTTTCCA 122 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||||| |||||| || ||||| || ||||||||||| ||| || ||||| Sbjct 121 GCAAAGATCAATCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGGATCTT-TGCTTT 63 Query 127037 A--GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 | ||| |||| || || | |||||| || || | || | || || || |||| Sbjct 62 AACATTG-TCGATAGTATCTGAACTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCA 7 >seq261322 Length=6793 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | | ||| || ||| || ||||| || || Sbjct 4381 GTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCG 4440 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||||||||||||| || || || ||||| |||||||| || || ||| Sbjct 4441 GCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTA 4500 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 4501 ACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGTC 4560 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 4561 TTCACAAAGATCTGCAT 4577 >seq45869 Length=5042 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||| ||||| |||||||| | | || || ||| || ||||| ||||| ||| ||| Sbjct 4375 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 4434 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGT 127042 ||||||||||||| || || || || || ||||||| | ||| | | || |||| | Sbjct 4435 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATTG 4493 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 || | ||||| | || ||||| | || | ||| || || || |||||||| || Sbjct 4494 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 4553 Query 127103 AAAATCTGCAT 127113 || |||||||| Sbjct 4554 AAGATCTGCAT 4564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473663108283200