Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq261322 125 8e-24 seq45869 125 8e-24 seq30399 122 1e-22 seq218976 114 1e-20 seq164539 100 3e-16 seq269538 98.7 1e-15 seq260619 89.7 6e-13 seq260618 82.4 9e-11 >seq261322 Length=6793 Score = 125 bits (138), Expect = 8e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | ||| || || | || ||||||||||| |||||||| Sbjct 4386 CTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAA 4445 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || |||||||| ||||| ||| | | Sbjct 4446 AATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATT 4505 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || |||| || ||||| ||||||||||| || || || Sbjct 4506 GTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGTCTTCAC 4565 Query 46582 AAAGATTTGCATTTTGCAC 46600 |||||| |||||||| ||| Sbjct 4566 AAAGATCTGCATTTTTCAC 4584 >seq45869 Length=5042 Score = 125 bits (138), Expect = 8e-24 Identities = 149/201 (74%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 46398 TACTCTCCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 |||| ||||| || || ||||| || | |||||| || | || ||||||||||| ||| Sbjct 4368 TACTTACCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCG 4427 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| ||||| ||||||||||| | || | | |||||||| ||||| ||| Sbjct 4428 GCGAAGATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTG 4487 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||||||||||| || || | |||||| || || ||||| || ||| Sbjct 4488 ACATTGTCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTT 4547 Query 46577 TTAACAAAGATTTGCATTTTG 46597 || || ||||| ||||||||| Sbjct 4548 TTCACGAAGATCTGCATTTTG 4568 >seq30399 Length=1829 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || ||||| |||| ||||||||||| || ||||| Sbjct 1620 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 1561 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | | |||||||||| |||||| ||| | | Sbjct 1560 AATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 1501 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| |||||| |||| |||||||| || || || || || ||||| Sbjct 1500 ATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAAC 1441 Query 46582 AAAGATTTGCAT 46593 ||| || ||||| Sbjct 1440 AAAAATCTGCAT 1429 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||| ||||| |||||||| | || ||||| | || ||| Sbjct 1409 ACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGACCATCCTCG 1350 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| ||||| | ||||||||| | || | | ||||| ||| | Sbjct 1349 AGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCTTCCTTATCCTGG 1290 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||| | ||| | | | |||||| |||||| |||| |||||||| || Sbjct 1289 ATCTTAGCCTTCA-CGTTGTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTT 1231 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || ||||| ||||| ||||| Sbjct 1230 TCCGGTAAGAGTCTTAACGAAGATCTGCAT 1201 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 46429 AGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCAC 46488 |||||| | || |||||||||||||| || || ||||| | ||||||||| | || | Sbjct 1821 AGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAAT 1762 Query 46489 GCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCAC 46545 | ||||||||| |||||| ||||| | | | ||||| |||| || || Sbjct 1761 ACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTC---TCAAC 1705 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||||||||| || || || || || |||||||||||||| Sbjct 1704 CTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTCACAAAGATTTGCAT 1657 >seq218976 Length=24853 Score = 114 bits (126), Expect = 1e-20 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | || |||||| ||||| |||||||||| ||||| || | Sbjct 11082 ACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACC 11023 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| |||||||| ||||| ||||||||||| | || | | ||||| Sbjct 11022 ATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTT 10963 Query 46498 GTCCATGATCTT--CTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 |||| |||||| ||| | |||| | |||||| || || || || | ||| Sbjct 10962 GTCCTGGATCTTGGCTTTCACATTGTCG--ATGGTGTCGGAAGACTCAACCTCTAGGGTG 10905 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || || ||||| || ||||| || ||||| ||||| || Sbjct 10904 ATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 10864 >seq164539 Length=4213 Score = 100 bits (110), Expect = 3e-16 Identities = 143/198 (72%), Gaps = 10/198 (5%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| | || ||||| | || || |||||||| || ||||| Sbjct 3976 CTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAA 4035 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT--CTTCTTGAGC 46519 ||||| | ||||||||| | || | | |||||||||| ||||| ||| | Sbjct 4036 AATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATCTTAGCTTTCACATT 4095 Query 46520 GTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 |||| | ||||| ||| ||||| |||| |||||||| || || |||| || Sbjct 4096 GTCG--ATGGTGTCAGAACTC---TCCACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTC 4150 Query 46577 TTAACAAAGATTTGCATT 46594 || |||||||| |||||| Sbjct 4151 TTCACAAAGATCTGCATT 4168 >seq269538 Length=12246 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||||||||||||||| | || |||||| ||||| |||||||| | Sbjct 439 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 380 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | |||| || || || || || || || ||||| ||||| ||||| | || Sbjct 379 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 320 Query 46487 ACGCTCTCCTTGTC 46500 | | ||||||||| Sbjct 319 ATACCCTCCTTGTC 306 >seq260619 Length=5677 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/207 (71%), Gaps = 9/207 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || ||||| || | |||||| || |||| || |||||||| || || || Sbjct 456 CTCTTTCTGAATGTTGTAATCAGCTAGAGTACGACCGTCTTCAAGCTGCTTTCCTGCAAA 515 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | || ||||||||| |||||| ||| | | | Sbjct 516 GATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGG-CTTTAACAT 574 Query 46522 CGCCACCG-TGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | || | |||| ||| |||||| || | ||||| || || || || || |||| Sbjct 575 TGTCAATGGTGTCTGAGCT---TTCCACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTTT 631 Query 46578 TAACAAAGATTTGCAT-TTTGCACAAA 46603 ||||||| || ||||| | | |||||| Sbjct 632 TAACAAATATCTGCATCTGTACACAAA 658 >seq260618 Length=7988 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | | |||||| ||||| | || ||||| || |||||||| |||| | Sbjct 623 CCTCCCCTGAGCCTCAACACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAATCGGCT 564 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || | | || || | ||||||||| || || ||||| | |||||||| | || Sbjct 563 AATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGG 504 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCCAC 46545 | | ||| |||||| ||||| ||| | ||| | || | ||||| |||||| Sbjct 503 ATACCCTCTTTGTCCTGAATCTTGGCCTTTA-CGTTGTCAATGGTGTCGGAGCTTTCCAC 445 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | || || || ||||| |||| || || || |||||||||||| Sbjct 444 CTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATT 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563053894893600