Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq67946 129 6e-25 seq30399 120 3e-22 seq218976 116 4e-21 seq260619 105 7e-18 seq269538 102 8e-17 seq261322 91.5 1e-13 seq68649 91.5 1e-13 seq260618 86.0 6e-12 >seq67946 Length=21248 Score = 129 bits (142), Expect = 6e-25 Identities = 382/583 (66%), Gaps = 12/583 (2%) Strand=Plus/Minus Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 ||| || ||||| || || ||||| || ||||| || ||||| | || || ||| || Sbjct 3709 CAAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGT 3650 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 || || ||||| | || |||||||| | ||||||||| | ||| || || || Sbjct 3649 TAATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAA 3590 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCT 133070 ||| | || || || || |||||||||| ||||| |||| || ||| | Sbjct 3589 GAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGT---TTCGGACCC 3533 Query 133071 GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGC 133130 ||||||| || || ||||||| ||||| | || || || || || || || || || Sbjct 3532 ATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGC 3473 Query 133131 GTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAA-- 133188 ||||| | || || || || | ||| | || | || | || Sbjct 3472 ACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAG---CAAACT 3416 Query 133189 -TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTA-AAAGCACCGCGCCT 133246 ||||| || || || | ||||| ||||||||||| || || || ||||||| | |||| Sbjct 3415 GTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCAC-GAGCCT 3357 Query 133247 CGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGC 133306 || | ||||| || |||| ||| | | | || || || ||||||||||| Sbjct 3356 CGGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTG 3297 Query 133307 TGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCT 133366 |||||| |||||||| || || || |||||||||| | || | | | | | Sbjct 3296 AGGCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTT 3237 Query 133367 CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGG 133426 |||||| || || || |||| || || || || || | ||||| || || ||| || Sbjct 3236 CCCAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCATGG 3177 Query 133427 CTTTTTTGTACATACTCCACATGTCCGAATATTGTA-TGGGAA 133468 |||| |||||||| ||| || | | ||| || | |||||| Sbjct 3176 CTTTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGGGAA 3134 >seq30399 Length=1829 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || |||||||| | || || || | || Sbjct 1429 ATGCAGATTTTTGTTAAGACCCTCACCGGAAAGACCATCACTTTGGAGGTGGAAAGCTCC 1488 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | || |||| ||||| |||||||||||| | ||||| Sbjct 1489 GACACCATTGATAATGTTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 1548 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | |||| ||| || || ||||| || |||| |||||||| |||||||||| Sbjct 1549 CAGAGGTTGATTTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAAC 1608 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| |||| || || | || || ||| Sbjct 1609 ATCCAGAAGGAGTCGACCCTTCACCTTGTCCTCCGT 1644 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || || ||| | || ||||| | | Sbjct 973 ATGCAGATCTTCGTGAAGACTCTCACGGGTAAGACGATTACCCTTGAGGTCGAAAGCTCA 1032 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || |||||| | ||||| Sbjct 1033 GACACCATTGACAACG-TCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCA 1091 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || || ||| |||| || | |||||||| |||||||| Sbjct 1092 GCAGAGGTTGATCTTTGCAGGAAAGCAGTTGGAAGATGGCCGCACCCTAGCTGACTACAA 1151 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || ||||||||||| ||| Sbjct 1152 CATCCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGT 1188 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| ||||| || || || |||||| | || || || | Sbjct 745 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACTATCACCCTAGAGGTGGAAAGTTCT 804 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| |||| | || |||| || || || ||||||||| | || || Sbjct 805 GATACAATCGACAACG-TTAAGGCTAAGATCCAGGATAAGGAAGGAATTCCCCCGGATCA 863 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || |||| || | ||| || || ||| |||| |||| || || || || ||||| Sbjct 864 GCAAAGGCTTATCTTCGCTGGAAAGCAGTTGGAGGACGGACGTACTCTAGCTGATTACAA 923 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || ||||||||||| ||| Sbjct 924 CATCCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGT 960 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || |||||||| | || || || | || Sbjct 1201 ATGCAGATCTTCGTTAAGACTCTTACCGGAAAGACCATCACTTTGGAGGTGGAAAGCTCC 1260 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || || ||| | ||||| Sbjct 1261 GACACCATTGACAACG-TGAAGGCTAAGATCCAGGATAAGGAAGGGATCCCCCCAGACCA 1319 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| || || ||||| || || | |||||||| |||||||| Sbjct 1320 GCAGAGGTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCCTGGCTGACTACAA 1379 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || ||| | || || ||| Sbjct 1380 CATCCAGAAGGAGTCTACCCTCCATCTTGTCCTCCGT 1416 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || || |||||||||||| | || || ||| | || Sbjct 1657 ATGCAAATCTTTGTGAAGACCCTTACCGGGAAAACCATCACCCTGGAGGTTGAGAGCTCC 1716 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| |||||| | ||||| Sbjct 1717 GACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAG 1776 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCAC 38407 ||| || | |||| || ||||| ||||| || || | ||||| Sbjct 1777 CAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGCCGCAC 1820 >seq218976 Length=24853 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| || ||||| || || |||||| | || || ||| | Sbjct 10864 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCT 10923 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | | |||| || |||| ||||| || || |||||| | ||| Sbjct 10924 TCCGACACCATCGACAATGTGAAAGCCAAGATCCAGGACAAGGAAGGGATTCCCCCAGAC 10983 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | |||| ||| || || ||||| || || | || || || ||||||| Sbjct 10984 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 11043 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| ||||| | || || ||| | ||||| ||| Sbjct 11044 AACATCCAGAAGGAGTCCACTCTCCATCTCGTGCTCCGT 11082 >seq260619 Length=5677 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || || ||||||||| | || || || | | Sbjct 419 ATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTCT 360 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | || |||| ||||| || || |||||| | ||||| Sbjct 359 GACACCATTGACAATGTTAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 300 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | |||||||| ||||| || |||| | ||||| || |||||| Sbjct 299 CAAAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAAC 240 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | || || || |||||||| ||| Sbjct 239 ATCCAGAAGGAATCAACCCTTCACTTGGTGCTCCGT 204 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || || || | || || || ||||||||| | || || || | | Sbjct 192 AATGCAAATTTTTGTGAAGACTTTGACTGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 133 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | |||| | || |||| ||||| || || |||||| | ||||| Sbjct 132 CGACACCATTGACAATGTTAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 73 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | |||||||| ||||| || |||| | ||||| || ||||| Sbjct 72 GCAAAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAA 13 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 12 CATCCAGAAGGA 1 >seq269538 Length=12246 Score = 102 bits (112), Expect = 8e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 38322 AAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCG 38381 |||| ||| || | ||||| ||||| |||||| | ||||||||||| | || | || Sbjct 291 AAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAACAGCGTTTGATCTTTGCT 350 Query 38382 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACG 38441 || ||||| || || |||| | | || || |||||||||||||| ||||| | || Sbjct 351 GGTAAACAACTTGAGGACGGGAGGACTCTTGCAGACTACAACATCCAGAAGGAGTCAACT 410 Query 38442 CTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||| ||||| ||||||||||||| || Sbjct 411 CTCCATCTGGTGTTGCGTTTGAGAGGAGG 439 >seq261322 Length=6793 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || || || || || || |||||||| ||||| ||| | || || ||| | Sbjct 4581 AAAAATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATTACCTTGGAGGTAGAGTC 4522 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | | |||| | || || | ||||| || || ||||| | || Sbjct 4521 ATCAGACACCATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATTCCACCAGA 4462 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| | |||| ||| || || ||||| || || | || || || ||||| Sbjct 4461 CCAGCAGCGATTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACGCTAGCTGACTA 4402 Query 38420 CAACATCCAAAAGGA 38434 ||||||||| ||||| Sbjct 4401 CAACATCCAGAAGGA 4387 >seq68649 Length=3576 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || || || || || || |||||||| || || ||| | || || ||| | Sbjct 2292 AAAAATGCAGATCTTTGTGAAGACCCTAACGGGCAAGACTATTACCTTAGAGGTAGAGTC 2351 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | | | | |||| | || || | ||||| || || ||||| | || Sbjct 2352 ATCGGATACCATTGACAATGTTAAGGCTAAGATTCAGGACAAGGAAGGCATTCCACCAGA 2411 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| || | |||| |||||| || ||||| || || | || || || ||||| Sbjct 2412 CCAGCAGAGGTTGATTTTCGCGGGAAAGCAGCTTGAGGATGGCCGAACGCTAGCTGACTA 2471 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| |||||| | || || || | || || ||| Sbjct 2472 CAACATCCAGAAGGAATCCACCCTCCACCTTGTCCTTCGT 2511 >seq260618 Length=7988 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || ||||| || |||||| | || || || | Sbjct 169 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 228 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | ||||| | |||||||| || ||||| | ||||| Sbjct 229 GACACCATTGACAATGTTAAGGCCAAAATTCAGGACAAAGAAGGTATTCCACCAGACCAG 288 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || || || || || |||| || ||||| || |||||| Sbjct 289 CAGAGGTTGATCTTTGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCTGATTACAAC 348 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || || ||||| |||||| | |||| || Sbjct 349 ATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGG 395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498239757171200