Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq32571 127 3e-24 seq45135 123 3e-23 >seq32571 Length=4521 Score = 127 bits (140), Expect = 3e-24 Identities = 308/455 (68%), Gaps = 16/455 (4%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || ||||| | || | || ||||| ||||| | ||||| ||||| || Sbjct 1521 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 1580 Query 15947 GATGACAACAATACCTGT--TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 | || | ||||| || ||| || | ||||||||||| || ||||| || ||||| Sbjct 1581 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 1638 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 16062 | || ||||||| ||||||||| || | | | | |||| | | |||| || | Sbjct 1639 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 1696 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT-CGCGAGCGACTTCAAAG 16121 | |||||||| ||||||| || || ||||| || ||||| | | | ||| ||| Sbjct 1697 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA- 1755 Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181 ||||| || || || ||| || ||||||||||||||||| || || | || | ||| Sbjct 1756 AGATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAACCTGAA 1815 Query 16182 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 |||| || || || ||| | |||||| ||||| || || || | || || || Sbjct 1816 -ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCC 1874 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT- 16299 ||||| || ||| | || || ||||| ||||| | | ||| || | ||| Sbjct 1875 AGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAA--TACGAGCCCCTACTGCAGTA 1932 Query 16300 -ATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 |||||||||||| ||| | ||| || || | ||| Sbjct 1933 AATCTCTCAGGTTTCTTCAAAAATTCTACGACCTC 1967 >seq45135 Length=7738 Score = 123 bits (136), Expect = 3e-23 Identities = 198/279 (71%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| || ||||||||||| |||||||| || |||| |||||||| | Sbjct 452 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 393 Query 16035 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 | ||| |||| | |||| ||||||| ||||||||||||||||| || || || || Sbjct 392 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 333 Query 16095 GGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 16150 ||| ||| | || || ||||| | ||||| || || || | || |||||||| Sbjct 332 GGT--GCTTTAGACTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCTCCCACACC 277 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 ||||||| ||| ||||| | || || | ||| || || || ||| || ||||| Sbjct 276 CACAAACAACTCAACAAACTCTGACGCTGCACAAGAGAAAAATGGCACACCAGCCTCACC 217 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || | |||| || | ||| ||||| || |||||||| Sbjct 216 AGCTACTGCTCTAGCTAAAAGGGTCTTTCCAGTACCTGG 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618343385809600