Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq45135 131 2e-25 seq32571 123 3e-23 seq298471 89.7 6e-13 seq276686 86.0 7e-12 >seq45135 Length=7738 Score = 131 bits (144), Expect = 2e-25 Identities = 196/276 (71%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| || |||||||| || |||||||| || |||| |||||||| | Sbjct 452 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 393 Query 9342 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | ||| |||| | |||| ||||||| ||||||||||||||||| || |||||||| Sbjct 392 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 333 Query 9402 GGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || || ||| | || | ||||| | ||| | ||| || || |||||||| || Sbjct 332 GG-TGCTTTAGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACACCCAC 274 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGC 9520 ||||| ||| ||||| | || || | ||| || || || ||| || ||||| || Sbjct 273 AAACAACTCAACAAACTCTGACGCTGCACAAGAGAAAAATGGCACACCAGCCTCACCAGC 214 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | |||| || | ||| ||||| || |||||||| Sbjct 213 TACTGCTCTAGCTAAAAGGGTCTTTCCAGTACCTGG 178 >seq32571 Length=4521 Score = 123 bits (136), Expect = 3e-23 Identities = 305/454 (67%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 1521 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 1580 Query 9254 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | || | ||||| || ||| || | ||||||||||| || ||||| |||||||| Sbjct 1581 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 1638 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 | || ||||||| ||||||||| || | | | | |||| | | |||| || | Sbjct 1639 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 1696 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | |||||||| ||||||| || ||||| || || |||||| ||| | | || | Sbjct 1697 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAAA 1756 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 |||| || || | ||| || ||||||||||||||||| || || | || | ||| Sbjct 1757 GATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAACCTGAA- 1815 Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 |||| || || || ||| | |||||| ||||| || || || | || || || Sbjct 1816 ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCCA 1875 Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGT-- 9606 ||||| || ||| | || || |||| ||||| | | ||| || | ||| Sbjct 1876 GTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAA--TACGAGCCCCTACTGCAGTAA 1933 Query 9607 ATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 |||||||||||| ||| | ||| || || | ||| Sbjct 1934 ATCTCTCAGGTTTCTTCAAAAATTCTACGACCTC 1967 >seq298471 Length=8164 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || |||||||| || || ||||| | ||| ||| ||||| | ||| Sbjct 5003 TGAGGCCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGA 5062 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | ||||||| | |||||| ||||| || || |||||| || | | Sbjct 5063 GACATCAAATGATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGAT 5122 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 107347 || | ||| | ||| | ||| || |||||| | | || | | | | ||| || Sbjct 5123 ACTCTCATCAGCATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAA 5182 Query 107348 CTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 | | ||||||||||||| |||||||||| || | ||| |||| Sbjct 5183 GACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTC 5226 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| | || || || ||||| || | |||||||||||| || ||| | ||| Sbjct 3663 ACATATCTAGGTAGAGCAATTGAAGCAAGATTGCAAACAGCAGTTTCAGTTGGACTAGTG 3722 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 ||||| | ||| |||||||||||||| ||| ||| || || || | ||||| ||||| Sbjct 3723 TACTCAATAATCTCTGTACACAAGTTAGAAGACTTGATAGTGCCAAGATTCTGCTGGTTG 3782 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| | ||||| | ||||| Sbjct 3783 CTTTTTCTATTGCAAGAATCCT 3804 >seq276686 Length=16051 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| |||||| || ||||| || | |||||| ||||| || ||| | |||| Sbjct 5082 ACATATCGTGGAAGAGCAATTGAGGCAAGATTGCACACAGCAGTTTCAGTAGGACTTGTG 5141 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 || || | |||||| ||||||||||| ||| ||| || || || | ||||| ||||| Sbjct 5142 TATTCAATAATTTCAGTACACAAGTTAGAAGACTTGATTGTGCCAAGATTCTGCTGGTTG 5201 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| |||| || | ||||| Sbjct 5202 CTTTTTCTGTTACAAGTATCCT 5223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587700671703200