Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq185198 288 1e-72 seq251255 271 9e-68 seq300263 242 4e-59 seq136295 196 6e-45 seq131297 149 7e-31 seq305974 129 7e-25 seq279245 104 3e-17 seq118191 95.1 1e-14 seq121469 89.7 6e-13 >seq185198 Length=5370 Score = 288 bits (318), Expect = 1e-72 Identities = 599/887 (68%), Gaps = 4/887 (0%) Strand=Plus/Plus Query 169783 TTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTA 169842 ||||| |||| ||||| | ||| || | ||||| ||||| || | |||||| | Sbjct 4104 TTTATTATTGCCTTCATTGATGCTTGTCCAGCAGACATTGATGGTATTCGTGAACCTTTT 4163 Query 169843 GCA-GGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAA 169901 || |||| | | | || | |||||||| || || ||||| || |||| |||| Sbjct 4164 TCAAGGTTTCTACTT-TACGAAAACAACATTATTTCCGGTGCGATTATTCCTACTTCTGC 4222 Query 169902 CGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTA 169961 || || ||| | || || || || |||| ||| || ||| | | |||| ||||| || Sbjct 4223 AGCTATAGGTTTACATTTTTACCCAATTTAGGATGCGGCATCCATTTATGAATGGTTATA 4282 Query 169962 TAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACAT 170021 |||| |||| |||| || || || | | |||||| || | || | || ||||| Sbjct 4283 CAACGATGGTTATTATGAACTAATTTTTCTACACTTCTTTCTTGGCGTATCCTGTTACAT 4342 Query 170022 GGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATA 170081 |||| | | ||||| || | |||| ||||||| | |||||||| ||| ||||| Sbjct 4343 GGGTCGTGATTGGGAGCTTAGCTTCCGTCTAGGTATAAGACCTTGGATTGTTGTTGCATA 4402 Query 170082 TTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATC 170141 || ||||| || | || | | | ||| | | || || ||||||| | | Sbjct 4403 TTAAGCTCCTGTTAGATTTGCTACCACAATTTTCCTTATCTACCCAATCGGTCAAGCAAA 4462 Query 170142 TTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCA 170201 || || || || ||||||||||| ||||| | || || || |||||| | |||||||| Sbjct 4463 CTTTTCTGATGGTATGCCTCTAGGAATCTCTTGCACTTTCAATTTCATGATTGTATTCCA 4522 Query 170202 AGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGG 170261 || || ||||||| |||||||||||||| || ||| ||| || ||| | | |||| Sbjct 4523 GGCCGAATACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTAGGGTATTCGA 4582 Query 170262 AGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGAC 170321 || |||| || || | | | ||| ||||||| ||| | | ||||| || || Sbjct 4583 CGGCTCACTATTTAGTGCCACGTATGGTAACTTTGTAACTTCTAGTTTGATCAGGGAAAC 4642 Query 170322 AACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAA 170381 | ||| || || || || | | || | |||||| ||||| |||||||| || || Sbjct 4643 CATAGAAAATGAATCTGCCAATAAATGTTAAAGATTCGGTCAAGAGGAAGAAACTTATAA 4702 Query 170382 CATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAA 170441 ||||| | || ||||| | ||||| | | ||||| ||||||||||| || ||||| Sbjct 4703 TATTGTAGACGCTCATGGTTGTTTTGGCCTATTGATCTTTCAATATGCTAGTTTCAACAA 4762 Query 170442 TAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTC 170501 |||| | ||||||||| | || | |||||| || | |||||||| || | Sbjct 4763 CTCTCGTTCGTTACACTTCTTCTTAGCCGCTAGGCCTGTATTAGGTATCTGGTTTACCGC 4822 Query 170502 AATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGT 170561 | ||||| |||| ||||| || ||||| ||| | || || |||||||| || | | Sbjct 4823 TTTAGGTATCAGCACTATGGCTTTCAACCTAAATTGTTTCAATTTCAACCAATCTGTACT 4882 Query 170562 AGATGGATCTG-GTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAG 170620 ||| | || | || ||| | || ||||| || | | ||| | || ||||| Sbjct 4883 TGATAG-TCAGTGTCGTGTAATCAACACTTGGGCTGATATCATCAACCGTGCTAACCTTA 4941 Query 170621 GTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGAC 170667 ||||| |||| |||||||| || ||||| | |||||||| || ||| Sbjct 4942 GTATGAAAGTTATGCATGAACGGAATGCTAATAACTTCCCTCTAGAC 4988 >seq251255 Length=474 Score = 271 bits (300), Expect = 9e-68 Identities = 344/473 (73%), Gaps = 0/473 (0%) Strand=Plus/Minus Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || || |||||| | |||||||| || || |||||||| |||||||||||||| || ||| Sbjct 473 TTCAATTTCATGATTGTATTCCAGGCTGAACACAACATCCTTATGCACCCATTTCACATG 414 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || ||||| | ||||| || | || ||| || ||||| ||||| | ||| Sbjct 413 TTAGGCGTAGCTGGGGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTA 354 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || ||||| || || || || | || |||| |||| Sbjct 353 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTC 294 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || ||||| |||||||| || || || || || || ||||| || ||||| || | ||| Sbjct 293 GGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATC 234 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| || ||||| |||| | ||||||||||| ||| | | ||| Sbjct 233 TTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCT 174 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 |||||| | |||||||| || | | ||||| |||| ||||| || ||||| ||||| Sbjct 173 GTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGT 114 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || |||||||| || | || || | ||| ||| || || ||||| || Sbjct 113 TTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAACACTTGGGCTGAT 54 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACA 170651 | | ||| | || ||||| ||||||||||| |||||||| |||||||| || Sbjct 53 ATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 1 >seq300263 Length=918 Score = 242 bits (268), Expect = 4e-59 Identities = 345/484 (71%), Gaps = 1/484 (0%) Strand=Plus/Plus Query 170185 TTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGG 170244 |||||| | |||||||| || || |||||||| |||||||||||||| || ||| ||| Sbjct 1 TTCATGATTGTATTCCAGGCTGAACACAACATCCTTATGCACCCATTTCACATGTTAGGC 60 Query 170245 GTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCT 170304 || ||||| | ||||| || | || ||| || ||||| ||||| | ||||| ||| Sbjct 61 GTAGCTGGGGTATTCGGTGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCT 120 Query 170305 TCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAA 170364 | | ||||| || || ||||| || || || || | || |||| ||| || ||| Sbjct 121 AGTTTGATCAGGGATACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAA 180 Query 170365 GAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAA 170424 || |||||||| || || || || || ||||| || ||||| || | ||||||||| Sbjct 181 GAGGAAGAAACTTATAATATCGTAGCCTTTCATGGTTATTTTGGCCGATTGATCTTCCAA 240 Query 170425 TATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTA 170484 |||||||| || ||||| || | | ||||||||||| | | | | |||| |||| Sbjct 241 TATGCTAGTTTCAACAACTCTCATTCGTTACACTTCTTCCTAGTTGCTTGGCCTGCAGTA 300 Query 170485 TGCATCTGG-TTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAA 170543 | |||||| || || | | ||||| |||| ||||| || ||||| ||||| || || Sbjct 301 GGTATCTGGTTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAA 360 Query 170544 CTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCT 170603 || ||||| | | || || | ||| ||| || | ||||| || | | Sbjct 361 TTTGAACCAATTTGTAGTTGACAGTCAGGGTCGTGTAATTAACAATTGGGCTGATATCAT 420 Query 170604 TAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACT 170663 ||| | || ||||| ||||||||||| |||||||| |||||||| ||||||||||| || Sbjct 421 CAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCT 480 Query 170664 TGAC 170667 ||| Sbjct 481 AGAC 484 >seq136295 Length=732 Score = 196 bits (216), Expect = 6e-45 Identities = 347/506 (69%), Gaps = 0/506 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || |||| ||||| ||||| || |||||||| Sbjct 506 TGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTTATGATCCCT 447 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | ||||| || | ||||| | |||| || || ||| Sbjct 446 ACCTTATTGACGGCAACTTATGTATTTATTATTACCTTCATTGATACTCCTCCAGTAGAC 387 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | ||| |||| |||| || | | || || |||||||| || | Sbjct 386 ATTGATGGTATTCGTGAAACTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTTC 327 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || || | || || | || || |||||||| Sbjct 326 GGTGCCATTATTCCTACTTCTGCAGCTATAGGATTACATTTTTTCCCAATCTGGGAAGCG 267 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| | | ||| | ||||| || || |||||||||||| || || || | | |||||| Sbjct 266 GCATCCATTGATAAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTC 207 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || ||||||||| | ||| ||| || | |||| | |||||| Sbjct 206 TTACTTGGCGTAGCTTGGTACATGGGTCGTGAGTTGGAGCTTAGCTTCCGTCTGGGTATG 147 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 || |||||||| ||| ||||||| ||||| || |||| || ||| || ||||| Sbjct 146 CGACCTTGGATTGTTGTTCCATATTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTG 87 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | || || ||||||| ||| ||| || || || |||||||||| ||||| ||||| Sbjct 86 ATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTTTGCCTCTAGGAATCTCTGGTACT 27 Query 170179 TTTAACTTCATGTTCGTATTCCAAGC 170204 || || |||||| | |||||||| || Sbjct 26 TTCAATTTCATGATTGTATTCCAGGC 1 >seq131297 Length=3196 Score = 149 bits (164), Expect = 7e-31 Identities = 220/312 (71%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 169791 TGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTC 169850 ||| ||||| || ||||| || || ||||| ||||| || | |||||| | |||| || Sbjct 1 TGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGAACCTATTTCAGGGTC 60 Query 169851 ATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGG 169910 | | || || |||||||| || || ||||| || |||| |||| || || || Sbjct 61 TCTACTTTACGGAAACAACATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGG 120 Query 169911 TCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGG 169970 | | || || || || || |||||||| ||| | | ||||| ||||| || |||||||| Sbjct 121 TTTACATTTTTACCCAATGTGGGAAGCGGCATCAGTTGATGAATGGTTATACAACGGTGG 180 Query 169971 TCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACA 170030 ||||||| || || || | | |||||| | | || | || ||||||||| | Sbjct 181 TCCTTATGAACTAATTTTTCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCATGA 240 Query 170031 GTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCC 170090 |||||| || | | || | |||||||| |||||||| ||| |||||||| ||||| Sbjct 241 GTGGGAGCTTAGCTTCTGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCC 300 Query 170091 AGTGTCAGCAGC 170102 || |||| || Sbjct 301 TGTTGCAGCTGC 312 >seq305974 Length=18384 Score = 129 bits (142), Expect = 7e-25 Identities = 190/269 (71%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 170173 GGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTC 170232 ||||| || || |||||| | |||||||| | ||||||||||| |||||||||||||| Sbjct 4740 GGTACTTTCAATTTCATGATTGTATTCCAGCCTGAGCACAACATCCTTATGCACCCATTT 4681 Query 170233 CATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCA 170292 || || ||| | |||||| | || || | || |||| || ||||| | ||| Sbjct 4680 CACATCTTAGGCCTAGCTGGTGTAAAAGGTGGCTCCCTATTCTATGCTATGCATGCTTCC 4621 Query 170293 CTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATAC 170352 | ||||||| | | | |||| || | || || || || || || | || ||| Sbjct 4620 TTGGTAACATTTAGTTTGGTCAGGGAAAGCACTGAAAATGAATCTGCTAATGAAGGTTAC 4561 Query 170353 AAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGA 170412 ||||| | ||| | ||| ||||||| || || || || | |||| || ||||| || Sbjct 4560 AAATTTGTTCAAAAGGAAAAAACATAGAATATCGTAGCCTCTCATGCTTATTTTGGCCGA 4501 Query 170413 CTTATCTTCCAATATGCTAGCTTTAACAA 170441 | ||||||||||||||||| || ||||| Sbjct 4500 TTGATCTTCCAATATGCTAGTTTCAACAA 4472 >seq279245 Length=1567 Score = 104 bits (114), Expect = 3e-17 Identities = 101/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 170129 TCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCA 170188 ||||||| ||| ||| || | || ||||||||||| |||| ||||| || || |||| Sbjct 815 TCGGTCAAGGAAGTTTTTCTAATGGTATGCCTCTAGGAGTCTCTGGTACTTTCAATTTCA 756 Query 170189 TGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTG 170248 || | |||||||| || || |||||||| ||||||||| |||| |||||| ||| || | Sbjct 755 TGATTGTATTCCAGGCTGAACACAACATCCTTATGCACTCATTTCATATGTTAGGCGTAG 696 Query 170249 CT--GGTAT 170255 || ||||| Sbjct 695 CTAGGGTAT 687 >seq118191 Length=2313 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 170350 TACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGT 170409 |||| |||| | ||||| ||| |||| || || ||||| | | ||||| || ||||| Sbjct 662 TACATATTCTGTCAAGAGGAAAAAACTTATAATATTGTAGTCGTTCATGGTTATTTTGGC 721 Query 170410 AGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCT 170469 || | |||| || ||||| ||| || || | |||| | ||||||||||||||| Sbjct 722 TGATTGATCTACCGATATGTTAGTTTCAATGACTCTCGTTCGTTACACTTCTTCCTTGCT 781 Query 170470 ACATTCCCTGTAGTATGCATCTGGTTAACTTC-AATGGGTATTTGCACAATGGCATTTAA 170528 | | | | ||||| | |||||||| || | | |||||| |||| ||| || || Sbjct 782 GCTTGGCATATAGTAGGTATCTGGTTTACCGCTTTTAGGTATTAGCACTATGCTTTTCAA 841 Query 170529 CCTTAATGGATTTAACTTCAACCAGTCAATCGTAGAT 170565 || ||| | || || |||||||| || || || ||| Sbjct 842 TCTAAATAGTTTCAATTTCAACCAATCTATAGTTGAT 878 >seq121469 Length=13774 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 170455 CACTTCTTCCTTGCTACATTCCCTGTAGTATGCAT--CTGGTTAACTTCAATGGGTATTT 170512 ||||||||| ||| | | ||||||||| | || |||||| || | | ||||| Sbjct 4564 CACTTCTTCTGAGCTGCTTGGCCTGTAGTAGGTATATCTGGTTTACCGCTTTAGGTATCA 4623 Query 170513 GCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTG 170572 |||| ||||| || ||||| ||||| || || |||||||| || | || ||| | || | Sbjct 4624 GCACTATGGCTTTCAACCTGAATGGTTTCAATTTCAACCAATCTGTAGTTGATAG-TCAG 4682 Query 170573 -GTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTA 170631 || | ||| || || ||||| || | | ||| | || | ||| ||||||||||| Sbjct 4683 TGTCATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAGCCTTGGTATGGAAGTT 4742 Query 170632 ATGCATGAGCGT 170643 |||||||| ||| Sbjct 4743 ATGCATGAACGT 4754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580595438192000