Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq185198 324 4e-84 seq251255 246 9e-61 seq136295 233 6e-57 seq300263 221 4e-53 seq131297 158 4e-34 seq279245 122 3e-23 seq300056 86.0 2e-12 seq79154 80.6 8e-11 >seq185198 Length=5370 Score = 324 bits (358), Expect = 4e-84 Identities = 640/946 (68%), Gaps = 12/946 (1%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| | || || || ||||||||||||| ||| | | Sbjct 4997 AGCAGCTAGGTCTAGAGGGAAGTTATTAGCATTCCGTTCATGCATAACTTTCATACTAAG 4938 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || |||||||| | || ||||||||||| || || | | | ||||| || Sbjct 4937 GTTAGCACGGTTGATGATATCAGCCCAAGTGTTGATTACACGACACTGACTATCAAGTAC 4878 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || | || || || |||||||||||| || || | |||||| Sbjct 4877 AGATTGGTTGAAATTGAAACAATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGT 4818 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 || ||| || | || |||| ||| || | |||||| ||||| || || || Sbjct 4817 AAACCAGATACCTAATACAGGCCTAGCGGCTAAGAAGAAGTGTAACGAACGAGAGTTGTT 4758 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 || |||||||| || ||||| | | ||||| | |||||||| | ||||| ||||| Sbjct 4757 GAAACTAGCATATTGAAAGATCAATAGGCCAAAACAACCATGAGCGTCTACAATATTATA 4698 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 || ||||| ||||| |||||| | || | | || ||||||| | | ||||| Sbjct 4697 AGTTTCTTCCTCTTGACCGAATCTTTAACATTTATTGGCAGATTCATTTTCTATGGTTTC 4638 Query 36329 ACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 36388 | || | ||||| |||| | || | | | ||| |||| | || |||| Sbjct 4637 CCTGATCAAACTAGAAGTTACAAAGTTACCATACGTGGCACTAAATAGTGAGCCGTCGAA 4578 Query 36389 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAA 36448 ||||| || || || | ||| || || || ||||||||||| |||| ||| ||||| || Sbjct 4577 TACCCTAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTATTCGGCCTGGAA 4518 Query 36449 GACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCC 36508 |||| ||| ||||||||||| | || || || ||||||||||||||||| || | | Sbjct 4517 TACAATCATGAAATTGAAAGTGCAAGAGATTCCTAGAGGCATACCATCAGAAAAGTTTGC 4458 Query 36509 TTGTCCAAAAGGGTAGACTAAGAATAC------AGCAAATGCTGCTGCAACAGGGGCTGA 36562 ||| || | ||||||| | ||| | ||||||| || |||||| ||| | Sbjct 4457 TTGACCGATTGGGTAGATAAGGAAAATTGTGGTAGCAAAT----CT--AACAGGAGCTTA 4404 Query 36563 ATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCC 36622 ||| || ||| ||||| || || |||||||| | | ||||| ||||| | || || Sbjct 4403 ATATGCAACAACAATCCAAGGTCTTATACCTAGACGGAAGCTAAGCTCCCAATCACGACC 4344 Query 36623 CAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTT 36682 || |||| || | |||| | ||||| | | ||| |||| ||| || |||| Sbjct 4343 CATGTAACAGGATACGCCAAGAAAGAAGTGTAGAAAAATTAGTTCATAATAACCATCGTT 4284 Query 36683 ATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 36742 |||||||| || | | || ||| || ||| | |||||||| || || | ||| || || Sbjct 4283 GTATAACCATTCATAAATGGATGCCGCATCCTAAATTGGGTAAAAATGTAAACCTATAGC 4224 Query 36743 GTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGA 36802 || | || | || || || || || ||||||||| | || |||| | ||| Sbjct 4223 TGCAGAAGTAGGAATAATCGCACCGGAAATAATGTTGTTTTCGTAAAGTAGAAACCTTGA 4164 Query 36803 GACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAA 36862 | ||| |||||||||||||| || || | ||| ||| ||| || ||||| | ||| Sbjct 4163 AAAAGGTTCACGAATACCATCAATGTCTGCTGGACAAGCATCAATGAAGGCAATAATAAA 4104 Query 36863 TGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAAC 36908 | | | ||| || || | | | ||||||| | ||||||||| Sbjct 4103 TACAGAAGTTGCCGTCAATAAGGTATGGATCATGAAAACCCCAAAC 4058 >seq251255 Length=474 Score = 246 bits (272), Expect = 9e-61 Identities = 339/474 (72%), Gaps = 0/474 (0%) Strand=Plus/Plus Query 35994 TGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCC 36053 || || ||||| ||||||||||||||||| || | || |||||||| | || |||||| Sbjct 1 TGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATATCAGCC 60 Query 36054 CAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTG 36113 ||||| | || | || | ||||| || || || ||||| || || || || Sbjct 61 CAAGTGTTAATTACACGACCCTGACTGTCAACTACAGATTGGTTGAAATTGAAACCATTT 120 Query 36114 AGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAA 36173 || || |||||||||||| || || | |||||||| ||| || | || |||||| Sbjct 121 AGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAACCAGATACCTACTACAGGCCAA 180 Query 36174 GCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAGATGAGT 36233 ||||| |||||||| ||||| || || || || |||||||| |||||||| | | Sbjct 181 GCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAAT 240 Query 36234 CTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTA 36293 | ||||| || |||||||| || || || ||||| || ||||| ||||| |||||| | Sbjct 241 CGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTG 300 Query 36294 TATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGA 36353 || || | || ||||||| | || ||||| | || | ||||| || | Sbjct 301 TAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAG 360 Query 36354 CTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGG 36413 || ||||||||| ||||| | || ||||||||||| || || || | ||| || Sbjct 361 GAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACCCCAGCTACGCCTAACATGTGA 420 Query 36414 AACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAA 36467 || || ||||||||||| |||||||| ||||| || |||| ||| ||||||||| Sbjct 421 AATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATACAATCATGAAATTGAAA 474 >seq136295 Length=732 Score = 233 bits (258), Expect = 6e-57 Identities = 363/517 (70%), Gaps = 4/517 (1%) Strand=Plus/Plus Query 36441 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 36500 ||||| || |||| ||| ||||||||||| || || || || ||||||| ||||||||| Sbjct 1 GCCTGGAATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCAAACCATCAGAA 60 Query 36501 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCT 36560 ||||| ||||| || | ||||||| ||||| || || || ||||||||||| ||| Sbjct 61 AAACTTCCTTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCT 120 Query 36561 GAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGT 36620 ||||| | ||| ||||| || | |||||| || | | ||||| ||| | | || Sbjct 121 GAATATGGAACAACAATCCAAGGTCGCATACCCAGACGGAAGCTAAGCTCCAACTCACGA 180 Query 36621 CCCAAGTAAGCTGAGATA--CCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTC 36678 |||| ||| | || || |||| | ||||| | ||||| |||| ||| || || | Sbjct 181 CCCATGTA--CCAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCAC 238 Query 36679 CGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGA 36738 | || |||||||| | || | || ||| ||||||||||||||| | || || | || | Sbjct 239 CATTGTATAACCATTTATCAATGGATGCCGCTTCCCAGATTGGGAAAAAATGTAATCCTA 298 Query 36739 TTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTC 36798 | || || | || | || || || | || ||||||||||| || |||| | | Sbjct 299 TAGCTGCAGAAGTAGGAATAATGGCACCGAAAATAATGTTGTTTCCGTAAAGTAGAGACC 358 Query 36799 CTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTA 36858 |||| |||| |||||||||||||| || || || ||||| | | ||| || | ||| | Sbjct 359 CTGAAACAGTTTCACGAATACCATCAATGTCTACTGGAGGAGTATCAATGAAGGTAATAA 418 Query 36859 AAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACAT 36918 |||| | ||| || || | | ||||||||| | || |||||||| || | | Sbjct 419 TAAATACATAAGTTGCCGTCAATAAGGTAGGGATCATAAAAACACCAAACCATCCAATGT 478 Query 36919 AGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 | || ||||| | || || || | ||||| ||| || Sbjct 479 AAAGACGGTTTTCAGTGCTAGTTATCCAGTAACAGAA 515 >seq300263 Length=918 Score = 221 bits (244), Expect = 4e-53 Identities = 347/491 (71%), Gaps = 7/491 (1%) Strand=Plus/Minus Query 35974 CTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGG 36033 ||||||| || ||||||||||| || ||||| ||||||||||||||||| || | || | Sbjct 488 CTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAG 429 Query 36034 CACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACT 36093 ||||||| | || ||||||||| | | || | || | ||||| || | | Sbjct 428 CACGGTTGATGATATCAGCCCAATTGTTAATTACACGACCCTGACTGTCAACTACAAATT 369 Query 36094 GATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAG-C 36152 | || || || || || || || || |||||||||||| || || | |||||||| | Sbjct 368 GGTTCAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAAC 309 Query 36153 CATATGCA-AGTGACGGGCCAAGCAGCCAGGAAGAAATGTAA--ACTGCGGCTATTATTA 36209 || || | | || | ||||||||| | |||||||| ||||| | || | | | || Sbjct 308 CAGATACCTACTG-CAGGCCAAGCAACTAGGAAGAAGTGTAACGAATGAGAGT--TGTTG 252 Query 36210 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 36269 || |||||||| |||||||| | || ||||| || |||||| || || || ||||| Sbjct 251 AAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAAAGGCTACGATATTATAA 192 Query 36270 GTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCA 36329 || ||||| ||||| || ||| | || || | || ||||||| | || || || Sbjct 191 GTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTATCC 132 Query 36330 CGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 36389 | || | ||||| || | || ||||||||| ||||| | ||||||||| Sbjct 131 CTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCACCGAAT 72 Query 36390 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 36449 ||||| || || || | ||| || || || ||||||||||| |||||||| ||||| || Sbjct 71 ACCCCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAAT 12 Query 36450 ACAAACATAAA 36460 |||| ||| || Sbjct 11 ACAATCATGAA 1 >seq131297 Length=3196 Score = 158 bits (174), Expect = 4e-34 Identities = 222/312 (71%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 36543 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAA 36602 || ||||||||||| |||||||| || ||| ||||| || | |||||| || | | Sbjct 312 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACAGAAG 253 Query 36603 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATG 36662 ||||| ||||| | | |||| |||| | | |||| | ||||| | | ||| Sbjct 252 CTAAGCTCCCACTCATGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAAAAATT 193 Query 36663 AGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 36722 |||| ||| || || ||||| |||||||| || || | | ||| |||||||| |||||| Sbjct 192 AGTTCATAAGGACCACCGTTGTATAACCATTCATCAACTGATGCCGCTTCCCACATTGGG 133 Query 36723 TAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTT 36782 || || || | ||| || || || | || | || || || || || ||||||||| Sbjct 132 TAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTT 73 Query 36783 CCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCA 36842 || || |||| | ||||| | ||| |||||||||||||| || || || ||||| ||| Sbjct 72 CCGTAAAGTAGAGACCCTGAAATAGGTTCACGAATACCATCAATGTCTACTGGAGGAGCA 13 Query 36843 GCAACAAATGCA 36854 |||| || ||| Sbjct 12 GCAATGAAGGCA 1 >seq279245 Length=1567 Score = 122 bits (134), Expect = 3e-23 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 36363 ATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGC 36422 |||||| ||||| | || || ||||||| || || || | |||||| || | ||| Sbjct 662 ATAGCACTGAATAGGGAGCCGCCAAATACCCTAGCTACGCCTAACATATGAAATGAGTGC 721 Query 36423 ATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCA 36482 |||||||| |||||||| ||||| || |||| ||| ||||||||||| || || | || Sbjct 722 ATAAGGATGTTGTGTTCAGCCTGGAATACAATCATGAAATTGAAAGTACCAGAGACTCCT 781 Query 36483 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGT 36522 ||||||||||||| ||| ||||| ||||| || | |||| Sbjct 782 AGAGGCATACCATTAGAAAAACTTCCTTGACCGATTGGGT 821 >seq300056 Length=11638 Score = 86.0 bits (94), Expect = 2e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 36777 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 36836 ||||||||||| |||| | |||||| ||||| |||||||||||||| || || || ||| Sbjct 10494 TTGTTTCCATAAAGTAGAGATCCTGAAACAGGTTCACGAATACCATCAATGTCTACTGGA 10435 Query 36837 GGCGCAGCAACAAATGCAATTAAAAAT 36863 || ||||||| || ||||| | |||| Sbjct 10434 GGAGCAGCAATGAAGGCAATAATAAAT 10408 >seq79154 Length=5071 Score = 80.6 bits (88), Expect = 8e-11 Identities = 117/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 35970 GCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAG 36029 ||| |||| || || |||||||| || || || || |||||||||| |||||| || | | Sbjct 4706 GCTCCTAG-TCTAGAGGGAAGTTATGAGCATTGCGTTCATGCATAAATTCCATACCAAGG 4764 Query 36030 TCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACG-ACTCTTCCGTTGGAATCAACGAC 36088 | |||||||| | || |||||||||||| | || | || | ||||| | Sbjct 4765 TTAGCACGGTTGATGATATCAGCCCAAGTTTTAATTTACACGACCCTGACTGTCAACTAT 4824 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTG 36131 || || ||||| || || || || || || |||||||||||| Sbjct 4825 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTG 4867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149902004789720