Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq185198 325 1e-84 seq251255 251 2e-62 seq136295 232 2e-56 seq300263 223 1e-53 seq131297 158 4e-34 seq279245 122 3e-23 seq300056 86.0 2e-12 seq79154 84.2 7e-12 >seq185198 Length=5370 Score = 325 bits (360), Expect = 1e-84 Identities = 638/942 (68%), Gaps = 12/942 (1%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| | || || || ||||||||||||| ||| | | || Sbjct 4993 GCTAGGTCTAGAGGGAAGTTATTAGCATTCCGTTCATGCATAACTTTCATACTAAGGTTA 4934 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | || ||||||||||| || || | | | ||||| || || Sbjct 4933 GCACGGTTGATGATATCAGCCCAAGTGTTGATTACACGACACTGACTATCAAGTACAGAT 4874 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || | || || || |||||||||||| || || | |||||||| | Sbjct 4873 TGGTTGAAATTGAAACAATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 4814 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || |||| ||| || | |||||| ||||| ||| || || || Sbjct 4813 CAGATACCTAATACAGGCCTAGCGGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 4754 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| || ||||| | | ||||| | |||||||| | ||||| ||||| || Sbjct 4753 CTAGCATATTGAAAGATCAATAGGCCAAAACAACCATGAGCGTCTACAATATTATAAGTT 4694 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || | | || ||||||| | | ||||| | Sbjct 4693 TCTTCCTCTTGACCGAATCTTTAACATTTATTGGCAGATTCATTTTCTATGGTTTCCCTG 4634 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| |||| | || | | | ||| |||| | || |||||||| Sbjct 4633 ATCAAACTAGAAGTTACAAAGTTACCATACGTGGCACTAAATAGTGAGCCGTCGAATACC 4574 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 | || || || | ||| || || || ||||||||||| |||| ||| ||||| || ||| Sbjct 4573 CTAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTATTCGGCCTGGAATACA 4514 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | ||| ||||||||||| | || || || ||||||||||||||||| || | |||| Sbjct 4513 ATCATGAAATTGAAAGTGCAAGAGATTCCTAGAGGCATACCATCAGAAAAGTTTGCTTGA 4454 Query 25993 CCAAAAGGGTAGACTAAGAATAC------AGCAAATGCTGCTGCAACAGGGGCTGAATAA 26046 || | ||||||| | ||| | ||||||| || |||||| ||| |||| Sbjct 4453 CCGATTGGGTAGATAAGGAAAATTGTGGTAGCAAAT----CT--AACAGGAGCTTAATAT 4400 Query 26047 GCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAG 26106 || ||| ||||| || || || ||||| | | ||||| ||||| | || |||| | Sbjct 4399 GCAACAACAATCCAAGGTCTTATACCTAGACGGAAGCTAAGCTCCCAATCACGACCCATG 4340 Query 26107 TAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATAC 26166 ||| || | ||| | | ||||| | | ||| |||| ||| ||| |||| || Sbjct 4339 TAACAGGATACGCCAAGAAAGAAGTGTAGAAAAATTAGTTCATAATAACCATCGTTGTAT 4280 Query 26167 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 26226 ||||| || | | || ||| || ||| | |||||||| || || | ||| || || | Sbjct 4279 AACCATTCATAAATGGATGCCGCATCCTAAATTGGGTAAAAATGTAAACCTATAGCTGCA 4220 Query 26227 GATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACA 26286 || | || | || || || || || ||||||||| | || |||| | ||| | | Sbjct 4219 GAAGTAGGAATAATCGCACCGGAAATAATGTTGTTTTCGTAAAGTAGAAACCTTGAAAAA 4160 Query 26287 GGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCT 26346 || |||||||||||||| || || | ||| ||| ||| || ||||| | |||| | Sbjct 4159 GGTTCACGAATACCATCAATGTCTGCTGGACAAGCATCAATGAAGGCAATAATAAATACA 4100 Query 26347 GTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAAC 26388 | ||| || || | | | ||||||| | ||||||||| Sbjct 4099 GAAGTTGCCGTCAATAAGGTATGGATCATGAAAACCCCAAAC 4058 >seq251255 Length=474 Score = 251 bits (278), Expect = 2e-62 Identities = 340/474 (72%), Gaps = 0/474 (0%) Strand=Plus/Plus Query 25474 TGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCC 25533 || || ||||| ||||||||||||||||| || | || |||||||| | || |||||| Sbjct 1 TGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATATCAGCC 60 Query 25534 CAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTG 25593 ||||| | || | || | ||||| || || || ||||| || || || || Sbjct 61 CAAGTGTTAATTACACGACCCTGACTGTCAACTACAGATTGGTTGAAATTGAAACCATTT 120 Query 25594 AGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAA 25653 || || |||||||||||| || || | |||||||| ||| || | || |||||| Sbjct 121 AGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAACCAGATACCTACTACAGGCCAA 180 Query 25654 GCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGT 25713 ||||| |||||||| ||||| ||| || || || |||||||| |||||||| | | Sbjct 181 GCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAAT 240 Query 25714 CTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTA 25773 | ||||| || |||||||| || || || ||||| || ||||| ||||| |||||| | Sbjct 241 CGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTG 300 Query 25774 TATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGA 25833 || || | || ||||||| | || ||||| | || | ||||| || | Sbjct 301 TAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAG 360 Query 25834 CTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGG 25893 || ||||||||| ||||| | || ||||||||||| || || || | ||| || Sbjct 361 GAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACCCCAGCTACGCCTAACATGTGA 420 Query 25894 AACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAA 25947 || || ||||||||||| |||||||| ||||| || |||| ||| ||||||||| Sbjct 421 AATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATACAATCATGAAATTGAAA 474 >seq136295 Length=732 Score = 232 bits (256), Expect = 2e-56 Identities = 363/518 (70%), Gaps = 6/518 (1%) Strand=Plus/Plus Query 25921 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 25980 ||||| || |||| ||| ||||||||||| || || || || ||||||| ||||||||| Sbjct 1 GCCTGGAATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCAAACCATCAGAA 60 Query 25981 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCT 26040 ||||| ||||| || | ||||||| ||||| || || || ||||||||||| ||| Sbjct 61 AAACTTCCTTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCT 120 Query 26041 GAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGT 26100 ||||| | ||| ||||| || | ||| || || | | ||||| ||| | | || Sbjct 121 GAATATGGAACAACAATCCAAGGTCGCATACCCAGACGGAAGCTAAGCTCCAACTCACGA 180 Query 26101 CCCAAGT---AAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCA 26157 |||| || ||||| | ||| | | ||||| | ||||| |||| ||| || ||| Sbjct 181 CCCATGTACCAAGCT---ACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCA 237 Query 26158 CCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCG 26217 || || || ||||| | || | || ||| ||||||||||||||| | || || | || Sbjct 238 CCATTGTATAACCATTTATCAATGGATGCCGCTTCCCAGATTGGGAAAAAATGTAATCCT 297 Query 26218 ATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCT 26277 || || ||| | || | || || || | || ||||||||||| || |||| | Sbjct 298 ATAGCTGCAGAAGTAGGAATAATGGCACCGAAAATAATGTTGTTTCCGTAAAGTAGAGAC 357 Query 26278 CCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATT 26337 ||||| |||| |||||||||||||| || || || ||||| | | ||| || | ||| Sbjct 358 CCTGAAACAGTTTCACGAATACCATCAATGTCTACTGGAGGAGTATCAATGAAGGTAATA 417 Query 26338 AAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACA 26397 | |||| | ||| || || | | ||||||||| | || |||||||| || | Sbjct 418 ATAAATACATAAGTTGCCGTCAATAAGGTAGGGATCATAAAAACACCAAACCATCCAATG 477 Query 26398 TAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 || || ||||| | || || || | ||||| ||| || Sbjct 478 TAAAGACGGTTTTCAGTGCTAGTTATCCAGTAACAGAA 515 >seq300263 Length=918 Score = 223 bits (246), Expect = 1e-53 Identities = 345/489 (71%), Gaps = 3/489 (1%) Strand=Plus/Minus Query 25454 CTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGG 25513 ||| ||| |||||||||||||| || ||||| ||||||||||||||||| || | || | Sbjct 488 CTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAG 429 Query 25514 CACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACT 25573 ||||||| | || ||||||||| | | || | || | ||||| || | | Sbjct 428 CACGGTTGATGATATCAGCCCAATTGTTAATTACACGACCCTGACTGTCAACTACAAATT 369 Query 25574 GATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAG-C 25632 | || || || || || || || || |||||||||||| || || | |||||||| | Sbjct 368 GGTTCAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAAC 309 Query 25633 CATATGCA-AGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAA 25691 || || | | || | ||||||||| | |||||||| ||||| | | || || || Sbjct 308 CAGATACCTACTG-CAGGCCAAGCAACTAGGAAGAAGTGTAACGAATGAGAGTTGTTGAA 250 Query 25692 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGT 25751 |||||||| |||||||| | || ||||| || |||||| || || || ||||| || Sbjct 249 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAAAGGCTACGATATTATAAGT 190 Query 25752 CTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACG 25811 ||||| ||||| || ||| | || || | || ||||||| | || || || | Sbjct 189 TTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTATCCCT 130 Query 25812 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 25871 || | ||||| || | || ||||||||| ||||| | ||||||||||| Sbjct 129 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCACCGAATAC 70 Query 25872 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGAC 25931 ||| || || || | ||| || || || ||||||||||| |||||||| ||||| || || Sbjct 69 CCCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATAC 10 Query 25932 AAACATAAA 25940 || ||| || Sbjct 9 AATCATGAA 1 >seq131297 Length=3196 Score = 158 bits (174), Expect = 4e-34 Identities = 222/312 (71%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 26023 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAA 26082 || ||||||||||| |||||||| || ||| ||||| || | ||| || || | | Sbjct 312 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACAGAAG 253 Query 26083 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATA 26142 ||||| ||||| | | |||| |||| | | ||| | | ||||| | | ||| Sbjct 252 CTAAGCTCCCACTCATGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAAAAATT 193 Query 26143 AGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 26202 |||| ||| || |||||||| || ||||| || || | | ||| |||||||| |||||| Sbjct 192 AGTTCATAAGGACCACCGTTGTATAACCATTCATCAACTGATGCCGCTTCCCACATTGGG 133 Query 26203 TAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTT 26262 || || || | ||| || || ||| | || | || || || || || ||||||||| Sbjct 132 TAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTT 73 Query 26263 CCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCA 26322 || || |||| | ||||| | ||| |||||||||||||| || || || ||||| ||| Sbjct 72 CCGTAAAGTAGAGACCCTGAAATAGGTTCACGAATACCATCAATGTCTACTGGAGGAGCA 13 Query 26323 GCAACAAATGCA 26334 |||| || ||| Sbjct 12 GCAATGAAGGCA 1 >seq279245 Length=1567 Score = 122 bits (134), Expect = 3e-23 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 25843 ATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGC 25902 |||||| ||||| | || || ||||||| || || || | |||||| || | ||| Sbjct 662 ATAGCACTGAATAGGGAGCCGCCAAATACCCTAGCTACGCCTAACATATGAAATGAGTGC 721 Query 25903 ATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCA 25962 |||||||| |||||||| ||||| || |||| ||| ||||||||||| || || | || Sbjct 722 ATAAGGATGTTGTGTTCAGCCTGGAATACAATCATGAAATTGAAAGTACCAGAGACTCCT 781 Query 25963 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGT 26002 ||||||||||||| ||| ||||| ||||| || | |||| Sbjct 782 AGAGGCATACCATTAGAAAAACTTCCTTGACCGATTGGGT 821 >seq300056 Length=11638 Score = 86.0 bits (94), Expect = 2e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 26257 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 26316 ||||||||||| |||| | |||||| ||||| |||||||||||||| || || || ||| Sbjct 10494 TTGTTTCCATAAAGTAGAGATCCTGAAACAGGTTCACGAATACCATCAATGTCTACTGGA 10435 Query 26317 GGCGCAGCAACAAATGCAATTAAAAAT 26343 || ||||||| || ||||| | |||| Sbjct 10434 GGAGCAGCAATGAAGGCAATAATAAAT 10408 >seq79154 Length=5071 Score = 84.2 bits (92), Expect = 7e-12 Identities = 113/156 (72%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 25457 AGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCAC 25516 |||| ||||||||||| || || || || |||||||||| |||||| || | || |||| Sbjct 4712 AGTCTAGAGGGAAGTTATGAGCATTGCGTTCATGCATAAATTCCATACCAAGGTTAGCAC 4771 Query 25517 GGTTAAGAATGTCAGCCCAAGTTGGGACG-ACTCTTCCGTTGGAATCAACGACTGACTGA 25575 |||| | || |||||||||||| | || | || | ||||| | || || Sbjct 4772 GGTTGATGATATCAGCCCAAGTTTTAATTTACACGACCCTGACTGTCAACTATAGATTGG 4831 Query 25576 TTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTG 25611 ||||| || || || || || || |||||||||||| Sbjct 4832 TTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTG 4867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151435553597680