Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq67164 98.7 2e-15 seq184543 91.5 3e-13 >seq67164 Length=2175 Score = 98.7 bits (108), Expect = 2e-15 Identities = 324/494 (66%), Gaps = 16/494 (3%) Strand=Plus/Minus Query 150310 AGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGATTC 150368 ||| ||||||||||| | |||||| | || ||| || || || | |||| ||||| Sbjct 2173 AGGAAAACTTGATCCTGTGATTGGTAGGGATGAAGAAATTCGAAGAG-TGATTCGGATTC 2115 Query 150369 TTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAAC 150426 | || | | || || || ||| ||||| ||| ||||||| || |||||||||||||| Sbjct 2114 TATCGAGGAGGACAAAGAACAATCCGGTGC-TTA-TTGGTGAGCCTGGTGTTGGTAAAAC 2057 Query 150427 ACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAA 150486 | | ||||| || |||||||| | || | | || ||||||||| | || Sbjct 2056 AGCTGTAGTTGAAGGGCTAGCACAAAGGATAGTTCGAGGGGATGTTCCAAGCAATTTGGC 1997 Query 150487 AGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGG 150546 |||||| || | | ||| ||||||| ||| | | |||||| | ||||| | || Sbjct 1996 TGATGTTAGGCTTATAGCATTGGATATGGGAGCACTCATTGCTGGAGCAAAGTACAGAGG 1937 Query 150547 TGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGAACGCGATG---AT 150601 |||||| ||||| | || || | | | || | ||| | |||| || | | Sbjct 1936 TGAATTTGAAGAGAGGTTGAAGGC--TGTTCTGAAGGAAGTGGAAGATGCAGAAGGGAAA 1879 Query 150602 GTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGT 150661 || ||||| ||||| ||||| ||||| || | ||||||||| |||| | || Sbjct 1878 GTAATTCTCTTCATTGATGAGATCCACTTGGTTTTAGGTGCTGGTAGGACT---GAAGGA 1822 Query 150662 TCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTCATC 150721 || ||||| |||| |||| ||||| || |||| || || | | ||| Sbjct 1821 TCAATGGATGCTGCCAATTTGTTCAAACCGATGCTTGCTCGGGGCCAATTAAGGTGCATT 1762 Query 150722 GGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGT 150781 |||||||||||| || || || | || | | || |||||||| ||| | | | Sbjct 1761 GGTGCAACAACCCTGGAAGAGTACAGGAAGTATGTGGAGAAAGATGCTGCATTCGAAAGG 1702 Query 150782 CGTTTCATGAAGGT 150795 |||||| | |||| Sbjct 1701 CGTTTCCAGCAGGT 1688 >seq184543 Length=4732 Score = 91.5 bits (100), Expect = 3e-13 Identities = 175/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 150310 AGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGATTC 150368 ||| ||||||||||| | |||||| | || ||| || || || | |||| ||||| Sbjct 3 AGGAAAACTTGATCCTGTGATTGGTAGGGATGAAGAAATTCGAAGAG-TGATTCGGATTC 61 Query 150369 TTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAAC 150426 | || | | || || || ||| ||||| ||| ||||||| || |||||||||||||| Sbjct 62 TATCGAGGAGGACAAAGAACAATCCGGTGC-TTA-TTGGTGAGCCTGGTGTTGGTAAAAC 119 Query 150427 ACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAA 150486 | | ||||| || |||||||| | || | | || ||||||||| | | || Sbjct 120 AGCTGTAGTTGAAGGGCTAGCACAAAGGATTGTTCGAGGCGATGTTCCAAGTAATTTGGC 179 Query 150487 AGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGG 150546 ||||| | | | ||| ||||||| ||| | | |||||| || ||||| | || Sbjct 180 TGATGTCAGGGTGATCGCATTGGATATGGGAGCACTCATTGCTGGAACAAAGTACAGAGG 239 Query 150547 TGAATTCGAAGA 150558 |||||| ||||| Sbjct 240 TGAATTTGAAGA 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1143044371251640