Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq45135 113 5e-20 seq32571 104 3e-17 seq298471 89.7 6e-13 >seq45135 Length=7738 Score = 113 bits (124), Expect = 5e-20 Identities = 192/276 (70%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| ||||||||||| | || |||| | || ||||| | ||| ||||| Sbjct 178 CCAGGTACTGGAAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTT 237 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || || | ||||| ||| ||||||| |||||||| || || ||| Sbjct 238 TTCTCTTGTGCAGCGTCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTT 297 Query 175435 CGCGATCTCTTTGAAATCGC-CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | ||| | ||||| | || | ||| | ||| |||||||| || ||||||||||| Sbjct 298 AGGGATTTGTTTGAGAAGGCGAAGTCTAAAGC-ACCTTGTATTGTGTTTATTGATGAGAT 356 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACA 175553 |||||| ||||| | |||| | | || ||| | | |||||| ||||| || || Sbjct 357 TGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCA 416 Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 || |||||||| || | || || |||||||| || Sbjct 417 GACTATTAATCAGCTTTTGACTGAAATGGATGGGTT 452 >seq32571 Length=4521 Score = 104 bits (114), Expect = 3e-17 Identities = 277/419 (66%), Gaps = 6/419 (1%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | || || ||| | ||| |||| ||||||| | || | || || || || Sbjct 1967 GAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCA 1908 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||| | ||| || ||||| || || ||| | || || || || Sbjct 1907 AAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATT 1848 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTT 175409 || |||||| | ||| ||||| || || | || | || | || || |||||||| Sbjct 1847 GCTGGTGAAGCGGGTGTTCCATTTTTCTCAATT-TCAGGTTCAGAATTCGTTGAGATGTT 1789 Query 175410 TGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACC 175469 ||||||||| || ||| | || || ||||| || | | ||| |||||| || Sbjct 1788 TGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCC 1729 Query 175470 ATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGT 175527 || ||||| || ||||||| |||||||| || || |||| | | |||| | | Sbjct 1728 TTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGG 1669 Query 175528 ATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGC 175587 | | || |||||| || || ||||| || | || |||||| | || || |||||||| Sbjct 1668 AGG--AGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGT 1611 Query 175588 TTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || || | ||||| || | ||| ||||||| || ||||| | ||||| ||||| Sbjct 1610 TTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGA 1552 >seq298471 Length=8164 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTC 75190 |||| ||| | || |||||||||| ||||||||||||| | | || ||| | | | Sbjct 5226 GACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAAAGGTCTTACCTTTTAAAGATT 5167 Query 75191 GATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCAC 75250 | || | | |||||| ||||| | ||| | ||| | || | | || |||||| Sbjct 5166 CAGGGAAAGATTGTGGAAAGGCCACAACATATGCTGATGAGAGTATCTGTTGGAATCCAC 5107 Query 75251 GGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT 75310 || || ||||| |||||| | ||||||| | |||||| ||| | ||||| | Sbjct 5106 AAAGAGGATATTGAATCTGTCATCAAGACATATCATTTGATGTCTCAACGCTGGTTCACT 5047 Query 75311 CACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||| | ||||| || || |||||||| || ||||| || || Sbjct 5046 CATGCATCTCCAACACTATTTAATGCTGGCACTCCAAGGCCTCA 5003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594264007638400