Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq185198 315 9e-81 seq251255 262 5e-65 seq300263 257 2e-63 seq136295 205 1e-47 seq131297 159 4e-34 seq279245 105 8e-18 >seq185198 Length=5370 Score = 315 bits (348), Expect = 9e-81 Identities = 644/945 (68%), Gaps = 18/945 (2%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| | ||||| | |||||||||||||| ||||| | ||| Sbjct 4993 GCTAGGTCTAGAGGGAAGTTATTAGCATTCCGTTCATGCATAACTTTCATACTAAGGTTA 4934 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTAC--CATTAAC-ATCAACAACT 8007 || | ||| | | ||| |||| || ||||| || || | || ||||| || Sbjct 4933 GCACGGTTGATGATATCAGCCCAAGTGT---TGATTACACGACACTGACTATCAAGTACA 4877 Query 8008 GATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTT 8067 |||||||| || || || | || ||||| || ||||| |||| ||||| | || || Sbjct 4876 GATTGGTTGAAATTGAAACAATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTA 4817 Query 8068 AACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT- 8126 ||||| | || || || || | || | ||||||||| | | | |||||| Sbjct 4816 AACCAGATACCTAATACAGGCCTAGCGGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTG 4757 Query 8127 AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATA 8186 |||| | ||||| || ||||| ||| ||||| | |||||||| | ||||||||||| Sbjct 4756 AAACTA-GCATATTGAAAGATCAATAGGCCAAAACAACCATGAGCGTCTACAATATTATA 4698 Query 8187 GGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTC 8246 || ||||| |||||||| || | |||| | || ||| || | ||| | || || Sbjct 4697 AGTTTCTTCCTCTTGACCGAATCTTTAACATTTATTGGCAGATTCATTTTCTATGGTTTC 4638 Query 8247 TCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAA 8306 ||||| | | ||| || || || ||| | | | ||||| || ||||| || |||| Sbjct 4637 CCTGATCAAACTAGAAGTTACAAAGTTACCATACGTGGCACTAAATAGTGAGCCGTCGAA 4578 Query 8307 CATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAA 8366 | | ||||| ||| ||| || || || |||||||| ||||| | || || ||||| Sbjct 4577 TACCCTAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTATTCGGCCTGGAA 4518 Query 8367 TACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACC 8426 ||| | |||||| || || || | ||| || ||||||||||| |||||||| || | Sbjct 4517 TACAATCATGAAATTGAAAGTGCAAGAGATTCCTAGAGGCATACCATCAGAAAAGTTTGC 4458 Query 8427 CTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGAT---ACTGGAGCACTATA 8483 ||||| | ||| || | | ||| | || | | |||| || || ||||| ||| Sbjct 4457 TTGACCGATTGGGTAGATAAGGAAAATTGTG---GTAGCAAATCTAACAGGAGCTTAATA 4401 Query 8484 TGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAA-CTCCCACTGTCTACCCA 8542 ||| ||| ||||| ||||| ||||||| ||| | | ||| |||||| | | ||||| Sbjct 4400 TGCAACAACAATCCAAGGTCTTATACCTAGACGGAA-GCTAAGCTCCCAATCACGACCCA 4342 Query 8543 TGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTAT 8602 ||||| || | |||| || |||||| | | || | | ||| ||| |||| | Sbjct 4341 TGTAACAGGATACGCCAAGAAAGAAGTGTAGAAAAATTAGTTCATAATAACCATCGTTGT 4282 Query 8603 ACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGT 8662 | ||||| |||| | | || || ||| |||| || || || ||||| || ||||| Sbjct 4281 ATAACCATTCATAAATGGATGCCGCATCCTAAATTGGGTAAAAATGTAAACCTATAGCTG 4222 Query 8663 TGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCT-GCA 8721 |||| |||| | ||||| || || ||||||||| | || | | | ||||| | | Sbjct 4221 CAGAAGTAGGAATAATCGCACCGGAAATAATGTTGTTTTCGTAAA-GTAGAAACCTTGAA 4163 Query 8722 ACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAG 8781 | ||||||||||||||| || || || | || |||| |||| || || | ||||| Sbjct 4162 AAAGGTTCACGAATACCATCAATGTCTGCTGGACAAGCATCAATGAAGGCAATAATAAAT 4103 Query 8782 CAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAAC 8826 || || || | || ||| | | ||||| | ||| |||||| Sbjct 4102 ACAGAAGTTGCCGTCAATAAGGTATGGATCATGAAAACCCCAAAC 4058 >seq251255 Length=474 Score = 262 bits (290), Expect = 5e-65 Identities = 344/474 (73%), Gaps = 2/474 (0%) Strand=Plus/Plus Query 7912 TGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTGCTCTGTTTAATACGTCACCC 7971 || ||||| | ||||||||||||||||||||| | ||| || | ||| | | ||| || Sbjct 1 TGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATATCAGCC 60 Query 7972 CATGTAGGAATGATTTTACCATTAACATCAACAACTGATTGGTTAAAGTTAAATCCGTTA 8031 || || ||| | ||| | | ||||| || |||||||| || || || || || Sbjct 61 CAAGTGTTAATTACACGACCCTGACTGTCAACTACAGATTGGTTGAAATTGAAACCATTT 120 Query 8032 AGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATACAACTGGGAAT 8091 ||||| || ||||| |||| ||||| | || || ||||| | || ||| || || | Sbjct 121 AGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAACCAGATACCTACTACAGGCCAA 180 Query 8092 GTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAACGATGCATACTGGAAGATTAA 8150 | ||| ||||||||||| | | | |||||| |||| | ||||| |||||||| || Sbjct 181 GCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTTGAAACTA-GCATATTGGAAGATCAA 239 Query 8151 TCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTT 8210 || ||||| || |||||||| || || |||||||| || ||||| |||||||| || | Sbjct 240 TCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCT 299 Query 8211 ATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAA 8270 ||||| | || ||| || | ||| || || || ||||| | | ||| || || || Sbjct 300 GTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAA 359 Query 8271 AGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATG 8330 ||||| |||||||||||||| || || || ||||| | || ||||| ||| ||| || Sbjct 360 GGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACCCCAGCTACGCCTAACATGTG 419 Query 8331 GAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAA 8384 || || |||||||| ||||| || || || |||||||| | |||||| || || Sbjct 420 AAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATACAATCATGAAATTGAA 473 >seq300263 Length=918 Score = 257 bits (284), Expect = 2e-63 Identities = 355/490 (72%), Gaps = 5/490 (1%) Strand=Plus/Minus Query 7892 CTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTG 7951 ||| ||||| ||||||||||| ||||| | ||||||||||||||||||||| | ||| | Sbjct 488 CTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAG 429 Query 7952 CTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGATT 8011 | | ||| | | ||| |||| | ||| | ||| | | ||||| || ||| Sbjct 428 CACGGTTGATGATATCAGCCCAATTGTTAATTACACGACCCTGACTGTCAACTACAAATT 369 Query 8012 GGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAA-C 8070 |||| || || || || || ||||| || ||||| |||| ||||| | || || || | Sbjct 368 GGTTCAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAAC 309 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCT-ACTGTTGTT-AA 8128 || | || ||| | || | | | | ||||||||||| | || | | |||||| || Sbjct 308 CAGATACCTACTGCAGGCCAAGCAACTAGGAAGAAGTGTA-ACGAATGAGAGTTGTTGAA 250 Query 8129 ACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGG 8188 || | ||||| |||||||| |||| ||||| || |||||| || || |||||||| | Sbjct 249 ACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAAAGGCTACGATATTATAAG 191 Query 8189 TCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTC 8248 | ||||| ||||||||||| | ||||| | || ||| || | ||| || || || | Sbjct 190 TTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTATCCC 131 Query 8249 TGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACA 8308 |||| | | ||| || || || ||||| |||||||||||||| || || |||||||| | Sbjct 130 TGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCACCGAATA 71 Query 8309 TACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATA 8368 || ||||| ||| ||| || || || |||||||| ||||| || || || ||||||| Sbjct 70 CCCCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATA 11 Query 8369 CGAACATGAA 8378 | | |||||| Sbjct 10 CAATCATGAA 1 >seq136295 Length=732 Score = 205 bits (226), Expect = 1e-47 Identities = 351/507 (69%), Gaps = 2/507 (0%) Strand=Plus/Plus Query 8359 GCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAG 8418 || |||||||| | |||||| || || |||||||| || |||||||||| |||||||| Sbjct 1 GCCTGGAATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCAAACCATCAGAA 60 Query 8419 AATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCA 8478 || || ||||| | ||| || | ||||| |||||| |||||| | || ||||| Sbjct 61 AAACTTCCTTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCT 120 Query 8479 CTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAA-CTCCCACTGTCT 8537 ||||| ||| ||||| |||| |||||| | ||| | | ||| |||| ||| | Sbjct 121 GAATATGGAACAACAATCCAAGGTCGCATACCCAGACGGAA-GCTAAGCTCCAACTCACG 179 Query 8538 ACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCC 8597 ||||||||| || | |||| | |||||| | | || | | ||| ||||| || Sbjct 180 ACCCATGTACCAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACC 239 Query 8598 GTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAAT 8657 || || ||||| | ||| | | || |||||||| || || | || |||||||| || Sbjct 240 ATTGTATAACCATTTATCAATGGATGCCGCTTCCCAGATTGGGAAAAAATGTAATCCTAT 299 Query 8658 AGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACC 8717 ||| |||| |||| | ||||| | || ||||||||||| || | | || || Sbjct 300 AGCTGCAGAAGTAGGAATAATGGCACCGAAAATAATGTTGTTTCCGTAAAGTAGAGACCC 359 Query 8718 TGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGAT 8777 || ||||| |||||||||||| || || || || || |||| | |||| || | | || Sbjct 360 TGAAACAGTTTCACGAATACCATCAATGTCTACTGGAGGAGTATCAATGAAGGTAATAAT 419 Query 8778 AAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATA 8837 ||| | || || | || ||| ||| ||||| | ||| |||||||| || | || Sbjct 420 AAATACATAAGTTGCCGTCAATAAGGTAGGGATCATAAAAACACCAAACCATCCAATGTA 479 Query 8838 AAGTCTGTTGTTTGTACTTGTAACCCA 8864 ||| | ||| | || || || | ||| Sbjct 480 AAGACGGTTTTCAGTGCTAGTTATCCA 506 >seq131297 Length=3196 Score = 159 bits (176), Expect = 4e-34 Identities = 233/327 (71%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 8446 AAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTC 8505 || || |||||| |||||| | || ||||| |||||| ||| ||||| |||| | Sbjct 327 AAAAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGC 268 Query 8506 ATACCTAAGCGGTATGATAA-CTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAG 8564 ||||| | | | | | ||| |||||||| |||||||||| || | |||| | Sbjct 267 ATACCCAGACAGAA-GCTAAGCTCCCACTCATGACCCATGTAACAAGCTACGCCAAGTAA 209 Query 8565 GAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGC 8624 |||||| | | || | | ||| ||||| ||||| || ||||| ||||| | || || Sbjct 208 GAAGTGTAGAAAAATTAGTTCATAAGGACCACCGTTGTATAACCATTCATCAACTGATGC 149 Query 8625 AGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACC 8684 |||||||| || || || || ||||| || ||||| |||| |||| | ||||| Sbjct 148 CGCTTCCCACATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACC 89 Query 8685 AGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGAT 8744 || || ||||||||||| || | | || |||| || ||||||||||||||| || || Sbjct 88 GGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAATAGGTTCACGAATACCATCAAT 29 Query 8745 ATCGACAGGTGGAGCAGCAATAAATGC 8771 || || || ||||||||||| || || Sbjct 28 GTCTACTGGAGGAGCAGCAATGAAGGC 2 >seq279245 Length=1567 Score = 105 bits (116), Expect = 8e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8281 ATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGC 8340 ||||||||||| || || || || || | | ||||| ||| |||||| || | ||| Sbjct 662 ATAGCACTGAATAGGGAGCCGCCAAATACCCTAGCTACGCCTAACATATGAAATGAGTGC 721 Query 8341 ATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCT 8400 ||||| ||||| || || || |||||||| | |||||| || || |||||||| | ||| Sbjct 722 ATAAGGATGTTGTGTTCAGCCTGGAATACAATCATGAAATTGAAAGTACCAGAGACTCCT 781 Query 8401 AGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGG 8438 |||||||| |||| ||| || || ||||| | ||| Sbjct 782 AGAGGCATACCATTAGAAAAACTTCCTTGACCGATTGG 819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613482245789600