Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq185198 345 1e-90 seq251255 280 4e-71 seq300263 246 9e-61 seq136295 239 1e-58 seq131297 143 8e-30 seq305974 109 2e-19 seq279245 105 2e-18 seq79154 105 2e-18 seq300056 102 2e-17 >seq185198 Length=5370 Score = 345 bits (382), Expect = 1e-90 Identities = 620/898 (69%), Gaps = 7/898 (1%) Strand=Plus/Plus Query 42378 CTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAAC 42436 |||| |||||| | || ||||||| ||| ||| | |||||||||||| |||||||||| Sbjct 4099 CTGTATTTATTATTGCCTTCATTGATGCTTGTCCAGCAGACATTGATGGTATTCGTGAAC 4158 Query 42437 CTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCA 42496 || | || | | ||| || || | |||||||| || || ||||| | | |||| Sbjct 4159 CTTTTTCAAGGTTTCTACTTTACGAAAACAACATTATTTCCGGTGCGATTATTCCTACTT 4218 Query 42497 GTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGC 42556 | || || || ||||||| || | || | ||| || || || | |||||| Sbjct 4219 CTGCAGCTATAGGTTTACATTTTTACCCAATTTAGGATGCGGCATCCATTTATGAATGGT 4278 Query 42557 TCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTT 42616 | ||||| | || |||| | || | | | |||||| || | || | | || || Sbjct 4279 TATACAACGATGGTTATTATGAACTAATTTTTCTACACTTCTTTCTTGGCGTATCCTGTT 4338 Query 42617 ACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTG 42676 || |||| || || ||||| ||| | ||| || || || || || ||||| |||||| Sbjct 4339 ACATGGGTCGTGATTGGGAGCTTAGCTTCCGTCTAGGTATAAGACCTTGGATTGTTGTTG 4398 Query 42677 CTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAG 42736 | || | || ||||| || || || | |||||| |||| ||| | || |||| Sbjct 4399 CATATTAAGCTCCTGTTAGATTTGCTACCACAATTTTCCTTATCTACCCAATCGGTCAAG 4458 Query 42737 GTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCT 42796 ||||| ||||| |||||||| || || || | || ||||| |||||| | || | Sbjct 4459 CAAACTTTTCTGATGGTATGCCTCTAGGAATCTCTTGCACTTTCAATTTCATGATTGTAT 4518 Query 42797 TCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTAT 42856 ||||||| ||| | ||||| |||||||| || || || ||| | || || || | |||| Sbjct 4519 TCCAGGCCGAATACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTAGGGTAT 4578 Query 42857 TTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTG 42916 | | || || | || || | | |||||| |||| || ||| | | | | | Sbjct 4579 TCGACGGCTCACTATTTAGTGCCACGTATGGTAACTTTGTAACTTCTAGTTTGATCAGGG 4638 Query 42917 AAACGACTGAAAACGAAA--GCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGAC 42974 |||| | ||||| ||| ||||| | ||| || | |||||||||||||| || || Sbjct 4639 AAACCATAGAAAATGAATCTGCCAATAA-ATGT-TAAAGATTCGGTCAAGAGGAAGAAAC 4696 Query 42975 TTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTT 43034 |||||| ||||| | || ||||||| ||||| | | ||||| |||||||| | ||| Sbjct 4697 TTATAATATTGTAGACGCTCATGGTTGTTTTGGCCTATTGATCTTTCAATATGC-TAGTT 4755 Query 43035 T-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGT 43093 | || || ||| || || |||||||| | |||||| |||| || | || || |||| Sbjct 4756 TCAACAACTCTCGTTCGTTACACTTCTTCTTAGCCGCTAGGCCTGTATTAGGTATCTGGT 4815 Query 43094 TCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAAT 43153 | || || | || |||| |||||||| || ||| | ||| |||| || || ||||||| Sbjct 4816 TTACCGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATTGTTTCAATTTCAACCAAT 4875 Query 43154 CACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCA 43213 | | |||||| |||| || ||| ||| |||||||||||||| | || ||||| | Sbjct 4876 CTGTACTTGATAGTCAGTGTCGTGTAATCAACACTTGGGCTGATATCATCAACCGTGCTA 4935 Query 43214 ACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 ||||| | | | || ||||| || |||||||| |||||||||| || || || || Sbjct 4936 ACCTTAGTATGAAAGTTATGCATGAACGGAATGCTAATAACTTCCCTCTAGACCTAGC 4993 >seq251255 Length=474 Score = 280 bits (310), Expect = 4e-71 Identities = 348/474 (73%), Gaps = 2/474 (0%) Strand=Plus/Minus Query 42778 TTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATG 42837 ||||| |||||| | || |||||||||||||| ||||| |||||||| || || || ||| Sbjct 473 TTCAATTTCATGATTGTATTCCAGGCTGAACACAACATCCTTATGCACCCATTTCACATG 414 Query 42838 CTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTC 42897 | || || || || ||||| || || || | ||| |||||||||||| | || Sbjct 413 TTAGGCGTAGCTGGGGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTA 354 Query 42898 ACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTC 42957 || ||| | | | | ||||| || ||||| ||| ||| | || |||| ||| Sbjct 353 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTC 294 Query 42958 GGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATC 43017 ||||||||||| || |||||||| || || || || |||||||| ||||| || | ||| Sbjct 293 GGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATC 234 Query 43018 TTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCC 43076 ||||||||||| | |||| || || ||| || || |||||||| || || |||||||| Sbjct 233 TTCCAATATGC-TAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCC 175 Query 43077 CGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGG 43136 || || || || ||||| || || | || |||| |||||||| || ||| | ||||| Sbjct 174 TGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGG 115 Query 43137 TTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGA 43196 ||| || || |||||||| | ||||| | |||| || ||| || ||||||||||| Sbjct 114 TTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTAATTAACACTTGGGCTGA 55 Query 43197 TATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACA 43250 ||| | || ||||| |||||||| | || || ||||| || || ||||| || Sbjct 54 TATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 1 >seq300263 Length=918 Score = 246 bits (272), Expect = 9e-61 Identities = 349/487 (72%), Gaps = 3/487 (1%) Strand=Plus/Plus Query 42784 TTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGT 42843 |||||| | || |||||||||||||| ||||| |||||||| || || || ||| | || Sbjct 1 TTCATGATTGTATTCCAGGCTGAACACAACATCCTTATGCACCCATTTCACATGTTAGGC 60 Query 42844 GTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCT 42903 || || || ||||| ||||| || | ||| |||||||||||| | || || ||| Sbjct 61 GTAGCTGGGGTATTCGGTGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCT 120 Query 42904 TCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAA 42963 | | | | || || || ||||| ||| ||| | || |||| || |||||| Sbjct 121 AGTTTGATCAGGGATACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAA 180 Query 42964 GAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAA 43023 ||||| || |||||||| || || || |||||||| ||||| || | ||||||||| Sbjct 181 GAGGAAGAAACTTATAATATCGTAGCCTTTCATGGTTATTTTGGCCGATTGATCTTCCAA 240 Query 43024 TATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGT 43082 ||||| | |||| || || || || || |||||||| || | |||||||| | || Sbjct 241 TATGC-TAGTTTCAACAACTCTCATTCGTTACACTTCTTCCTAGTTGCTTGGCCTGCAGT 299 Query 43083 GGGGATTTGGTTC-ACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTA 43141 || || ||||| || || | || |||| |||||||| || ||| | |||||||| | Sbjct 300 AGGTATCTGGTTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCA 359 Query 43142 ACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTT 43201 | || ||||||| | ||||| | |||| || ||| || | |||||||||||| Sbjct 360 ATTTGAACCAATTTGTAGTTGACAGTCAGGGTCGTGTAATTAACAATTGGGCTGATATCA 419 Query 43202 TGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGC 43261 | || ||||| |||||||| | || || ||||| || || ||||| || |||||||| | Sbjct 420 TCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTC 479 Query 43262 TTGATCT 43268 | || || Sbjct 480 TAGACCT 486 >seq136295 Length=732 Score = 239 bits (264), Expect = 1e-58 Identities = 372/527 (71%), Gaps = 6/527 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||| ||||| | ||| ||| | ||||||||||| |||| |||||| Sbjct 524 TGGGGTCGCTTCTGTTACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTT 465 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| | ||||| |||| || | | | | | ||| |||||| | | ||||| Sbjct 464 GGTGTTTTTATGAT-CCCTACCTTATTGACGGCAACTTATGTATTTATTATTACCTTCAT 406 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 || | | ||||| |||||||||||||| ||||||||| |||| || || ||||| || || Sbjct 405 TGATACTCCTCCAGTAGACATTGATGGTATTCGTGAAACTGTTTCAGGGTCTCTACTTTA 346 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || |||||||| || | |||||| | | |||| | || || ||| ||||||| Sbjct 345 CGGAAACAACATTATTTTCGGTGCCATTATTCCTACTTCTGCAGCTATAGGATTACATTT 286 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 | | ||||||||||| || |||| ||||| | |||||||| || |||||| | Sbjct 285 TTTCCCAATCTGGGAAGCGGCATCCATTGATAAATGGTTATACAATGGTGGTCCTTATGA 226 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCG--GTATCTTCTCTTACTTGGGACGCGAATGGGAA 42636 || | || | |||||| | | | ||| || | ||| |||| || || | ||| Sbjct 225 ACTAATTGTTCTACACTTCTTACTTGGCGTAGCT--TGGTACATGGGTCGTGAGTTGGAG 168 Query 42637 CTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCT 42696 ||| | ||| || || ||| | || ||||| ||||| | || || || ||||| || Sbjct 167 CTTAGCTTCCGTCTGGGTATGCGACCTTGGATTGTTGTTCCATATTCAGCTCCTGTTGCA 108 Query 42697 GCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATG 42756 || || || ||||| ||| | |||| ||| | || ||||| |||||| ||||| || Sbjct 107 GCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTTTG 48 Query 42757 CCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGC 42803 ||||| || || || ||||| ||||| |||||| | || |||||||| Sbjct 47 CCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGC 1 >seq131297 Length=3196 Score = 143 bits (158), Expect = 8e-30 Identities = 228/325 (70%), Gaps = 4/325 (1%) Strand=Plus/Plus Query 42391 GCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCT 42450 || ||||||||||| ||||| |||||||||||||| |||||||||||| | || || ||| Sbjct 2 GCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGAACCTATTTCAGGGTCT 61 Query 42451 CTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGA 42510 || || || || |||||||| || || |||||| | | |||| | || || || Sbjct 62 CTACTTTACGGAAACAACATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATAGGT 121 Query 42511 CTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGA 42570 ||||||| || | || |||||||| | |||| |||||| | ||||| || || Sbjct 122 TTACATTTTTACCCAATGTGGGAAGCGGCATCAGTTGATGAATGGTTATACAACGGTGGT 181 Query 42571 CCTTATCAGCTCGTCGTGTTCCACTTCCTTATCG--GTATCTTCTCTTACTTGGGACGCG 42628 |||||| | || | | | |||||| | | | ||| || | |||| |||| | | Sbjct 182 CCTTATGAACTAATTTTTCTACACTTCTTACTTGGCGTAGCT--TGTTACATGGGTCATG 239 Query 42629 AATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCC 42688 | ||||| ||| | | | || || ||| | || ||||| |||||| || || || | Sbjct 240 AGTGGGAGCTTAGCTTCTGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTC 299 Query 42689 CTGTGGCTGCAGCGACTGCAGTCTT 42713 |||| || || || || ||||| || Sbjct 300 CTGTTGCAGCTGCTACCGCAGTTTT 324 >seq305974 Length=18384 Score = 109 bits (120), Expect = 2e-19 Identities = 179/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 42771 CGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTT 42830 |||||| ||||| |||||| | || |||||| |||| || ||||| |||||||| || || Sbjct 4741 CGGTACTTTCAATTTCATGATTGTATTCCAGCCTGAGCACAACATCCTTATGCACCCATT 4682 Query 42831 CCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAG 42890 || || | || | || || ||| ||||| || | |||| |||||||||| | Sbjct 4681 TCACATCTTAGGCCTAGCTGGTGTAAAAGGTGGCTCCCTATTCTATGCTATGCATGCTTC 4622 Query 42891 TCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTA 42950 | || || | | | | || | |||| |||||||| ||| ||| | || || Sbjct 4621 CTTGGTAACATTTAGTTTGGTCAGGGAAAGCACTGAAAATGAATCTGCTAATGAAGGTTA 4562 Query 42951 CAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACG 43010 ||| || | |||| |||| | || || || || || || | |||| ||| ||||| || Sbjct 4561 CAAATTTGTTCAAAAGGAAAAAACATAGAATATCGTAGCCTCTCATGCTTATTTTGGCCG 4502 Query 43011 GCTTATCTTCCAATATGC 43028 | |||||||||||||| Sbjct 4501 ATTGATCTTCCAATATGC 4484 >seq279245 Length=1567 Score = 105 bits (116), Expect = 2e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 42724 CCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAAC 42783 ||| | || ||||| |||||| |||| |||||||| || | || ||||| ||||| Sbjct 819 CCAATCGGTCAAGGAAGTTTTTCTAATGGTATGCCTCTAGGAGTCTCTGGTACTTTCAAT 760 Query 42784 TTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGT 42843 |||||| | || |||||||||||||| ||||| |||||||| | || |||||| | || Sbjct 759 TTCATGATTGTATTCCAGGCTGAACACAACATCCTTATGCACTCATTTCATATGTTAGGC 700 Query 42844 GTTGCCGGCGTATTTGGTGGGTC 42866 || || | |||||||| || || Sbjct 699 GTAGCTAGGGTATTTGGCGGCTC 677 >seq79154 Length=5071 Score = 105 bits (116), Expect = 2e-18 Identities = 119/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 43109 TCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATC 43168 |||| |||||||| || ||| | |||||||| || || |||||||| | ||||| | || Sbjct 4871 TCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTATAGTTGACAGTC 4812 Query 43169 AGAATCATGTCA-TCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAG 43227 || || ||| | | |||||||||||||| | || ||||| |||||||| | || Sbjct 4811 AGGGTCGTGTAAATTAAAACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAA 4752 Query 43228 GTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGA 43265 | ||||| || || ||||| ||||||||||| || || Sbjct 4751 TTTATGCATGAACGCAATGCTCATAACTTCCCTCTAGA 4714 >seq300056 Length=11638 Score = 102 bits (112), Expect = 2e-17 Identities = 78/91 (86%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 42378 CTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAAC 42436 |||| |||||| | || ||||||||||| ||||| |||||||||||||| |||||||||| Sbjct 10404 CTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGAAC 10463 Query 42437 CTGTCTCTGGCTCTCTTCTGTATGGCAACAA 42467 |||| || || ||||| || ||||| ||||| Sbjct 10464 CTGTTTCAGGATCTCTACTTTATGGAAACAA 10494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143005817530640