Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq185198 279 1e-70 seq251255 244 3e-60 seq300263 241 4e-59 seq136295 237 4e-58 seq279245 118 3e-22 seq79154 91.5 4e-14 seq121469 84.2 6e-12 >seq185198 Length=5370 Score = 279 bits (308), Expect = 1e-70 Identities = 659/987 (67%), Gaps = 10/987 (1%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| | ||| || || || ||||| |||| ||||| || Sbjct 4997 AGCAGCTAGGTCTAGAGGGAAGTTATTAGCATTCCGTTCATGCATAACTTTCATACTAAG 4938 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | ||| | | |||||||||||| || || || | | || | ||| Sbjct 4937 GTTAGCACGGTTGATGATATCAGCCCAAGTGTTGATTACACGACACTGACTATCAAGTAC 4878 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || |||| ||| ||||| ||||||||||| ||||| | | ||| Sbjct 4877 AGATTGGTTGAAATTGAAACAATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGT 4818 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 || ||| || || | || || ||| | | |||||||||| || ||| ||||| Sbjct 4817 AAACCAGATACCTAATACAGGCCTAGCGGCTAAGAAGAAGTGTAACGAACGAGAGTTGTT 4758 Query 40769 GAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATA 40828 ||| |||||||||||| || | | ||||| |||| || || |||| || ||||| Sbjct 4757 GAAACTAGCATATTGAAAGATCAATAGGCCAAAACAACCATGAGCGTCTACAATATTATA 4698 Query 40829 AGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTC 40888 ||| || | || ||||| || | || | | || |||||| |||| |||| || Sbjct 4697 AGTTTCTTCCTCTTGACCGAATCTTTAACATTTATTGGCAGATTCATTTTCTATGGTTTC 4638 Query 40889 CCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAA 40948 || || | ||||| |||| | | || | | | ||| ||| | | || | || Sbjct 4637 CCTGATCAAACTAGAAGTTACAAAGTTACCATACGTGGCACTAAATAGTGAGCCGTCGAA 4578 Query 40949 GACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAA 41008 || | || ||||| | ||| || ||||||||||| || ||||||| ||| || ||||| Sbjct 4577 TACCCTAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTATTCGGCCTGGAA 4518 Query 41009 GACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACC 41068 |||| |||||| ||||| || | | |||||||| ||||||||||||||| || | Sbjct 4517 TACAATCATGAAATTGAAAGTGCAAGAGATTCCTAGAGGCATACCATCAGAAAAGTTTGC 4458 Query 41069 CTGACCGAATGGATAAACTAAG---AATACAGCTAGAGCTGCTGACAATGGAGCTGTGTA 41125 ||||||| ||| || | |||| ||| | ||| || ||| |||||| || Sbjct 4457 TTGACCGATTGGGTAGA-TAAGGAAAATTGTGGTAGCAAATCTAACA--GGAGCTTAATA 4401 Query 41126 TGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGC 41185 ||| |||| ||||| ||||| |||||||| | | | ||| ||||| | | ||| Sbjct 4400 TGCAACAACAATCCAAGGTCTTATACCTAGACGGAAGCTAAGCTCCCAATCACGACCCAT 4341 Query 41186 GTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTA 41245 ||| | ||| || | || ||||| | | ||| |||| ||| || ||||||| Sbjct 4340 GTAACAGGATACGCCAAGAAAGAAGTGTAGAAAAATTAGTTCATAATAACCATCGTTGTA 4281 Query 41246 TAGCCACTCGTCCA-GTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGT 41304 || ||| || | | | |||| || ||| | |||||||| ||||||| || || || Sbjct 4280 TAACCATTCATAAATGGATGCC-GCATCCTAAATTGGGTAAAAATGTAAACCTATAGCTG 4222 Query 41305 TAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAA 41364 ||| | |||| | || || || ||||| ||||| |||| | || | | |||| Sbjct 4221 CAGAAGTAGGAATAATCGCACCGGAAATAATGTTGTTTTCGTAAAGTAGAAACCTTGAAA 4162 Query 41365 CGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-A 41423 || ||||| || ||||| || ||| | || || | || ||||| || || || | Sbjct 4161 AAGGTTCACGAATACCATCAATGTCTGCTGGACAAGCATCAATGAAGGCAATAATAAATA 4102 Query 41424 CATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGG 41483 || | || || || | ||| | | ||||| | || |||||| | | | ||| || Sbjct 4101 CA-GAAGTTGCCGTCAATAAGGTATGGATCATGAAAACCCCAAACAATCAAATGTAAAGA 4043 Query 41484 CGGTTGTCGGTGCTAGTGACCCAGTTA 41510 | ||| | ||||||| | | ||||| Sbjct 4042 CAGTTTACATTGCTAGTTATCTAGTTA 4016 >seq251255 Length=474 Score = 244 bits (270), Expect = 3e-60 Identities = 338/473 (71%), Gaps = 0/473 (0%) Strand=Plus/Plus Query 40554 TGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTCTGTCTGTTAAGAACATCAGCC 40613 ||||| ||||| || ||||| ||||||||||| || | | ||| | | ||||||| Sbjct 1 TGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATATCAGCC 60 Query 40614 CAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGACTGGTTAAAGTTAAAACCATTG 40673 ||||| ||| || ||| | | ||| ||||| || ||||| || || |||||||| Sbjct 61 CAAGTGTTAATTACACGACCCTGACTGTCAACTACAGATTGGTTGAAATTGAAACCATTT 120 Query 40674 AGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAATAACCGGGAAA 40733 ||||| ||||||||||| ||||| | | ||||| ||| || || | || || || Sbjct 121 AGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAACCAGATACCTACTACAGGCCAA 180 Query 40734 GCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTAGT 40793 ||| | || |||||||||| || ||| |||||||| ||||||||| || || | | Sbjct 181 GCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAAT 240 Query 40794 CTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACTTA 40853 | ||||| ||||| || || |||||||| |||||||| || | || ||||| || | Sbjct 241 CGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTG 300 Query 40854 TACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAAGG 40913 || || | || |||||| |||| ||||| |||| || | ||||| || | | Sbjct 301 TAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAG 360 Query 40914 CTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGG 40973 || ||||||||| || | | || || || || || || ||||| | ||| || Sbjct 361 GAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACCCCAGCTACGCCTAACATGTGA 420 Query 40974 AATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAA 41026 ||||||||||| || ||||||||||| || ||||| |||| |||||| ||||| Sbjct 421 AATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATACAATCATGAAATTGAA 473 >seq300263 Length=918 Score = 241 bits (266), Expect = 4e-59 Identities = 347/488 (71%), Gaps = 1/488 (0%) Strand=Plus/Minus Query 40534 CTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTCT 40593 ||| ||||||||| ||||||||||| ||||| || ||||| ||||||||||| || | Sbjct 488 CTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAG 429 Query 40594 GTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGACT 40653 | ||| | | |||||||||| | ||| || ||| | | ||| ||||| | | Sbjct 428 CACGGTTGATGATATCAGCCCAATTGTTAATTACACGACCCTGACTGTCAACTACAAATT 369 Query 40654 GGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAG-C 40712 |||| || || |||||||| ||||| ||||||||||| ||||| | | ||||| | Sbjct 368 GGTTCAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAAC 309 Query 40713 CATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAAT 40772 || || || | | || ||||| | || |||||||||| || | | |||||||| Sbjct 308 CAGATACCTACTGCAGGCCAAGCAACTAGGAAGAAGTGTAACGAATGAGAGTTGTTGAAA 249 Query 40773 GAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTC 40832 ||||||||| || || | || ||||| ||||| || |||||||| |||||||| Sbjct 248 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAAAGGCTACGATATTATAAGTT 189 Query 40833 TCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGA 40892 || | || |||||||| | || || | || |||||| |||| ||||| |||| Sbjct 188 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTATCCCTG 129 Query 40893 ATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACG 40952 || | ||||| || | | || ||||||||| || | | ||||| || || Sbjct 128 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCACCGAATACC 69 Query 40953 CCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACA 41012 || || ||||| | ||| || ||||||||||| || ||||||||||| || ||||| ||| Sbjct 68 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATACA 9 Query 41013 AACATGAA 41020 | |||||| Sbjct 8 ATCATGAA 1 >seq136295 Length=732 Score = 237 bits (262), Expect = 4e-58 Identities = 366/517 (71%), Gaps = 4/517 (1%) Strand=Plus/Plus Query 41001 GCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAG 41060 || ||||| |||| |||||| ||||| || ||| |||||||| ||||| ||||||||| Sbjct 1 GCCTGGAATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCAAACCATCAGAA 60 Query 41061 AAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCT 41120 ||| || ||||||| ||| || | ||||| || || ||| |||| | |||||| Sbjct 61 AAACTTCCTTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCT 120 Query 41121 GTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTA 41180 | |||| |||| ||||| |||| |||||| || | | | ||| ||| ||| | | Sbjct 121 GAATATGGAACAACAATCCAAGGTCGCATACCCAGACGGAAGCTAAGCTCCAACTCACGA 180 Query 41181 CCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCG 41240 || ||| ||||| || | ||| ||||| | ||||| |||| ||| || || || Sbjct 181 CCCATGTACCAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCA 240 Query 41241 TTGTATAGCCACTCGTCCAGTG-TGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGAT 41299 ||||||| ||| | || | | ||||| |||||||||||||| | ||||||| ||| || Sbjct 241 TTGTATAACCATTTATCAATGGATGCCG-CTTCCCAGATTGGGAAAAAATGTAATCCTAT 299 Query 41300 TGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCC 41359 || ||| | |||| | || || | ||||| ||||| ||||| | || || || Sbjct 300 AGCTGCAGAAGTAGGAATAATGGCACCGAAAATAATGTTGTTTCCGTAAAGTAGAGACCC 359 Query 41360 GGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTAT 41419 ||||| | ||||| || ||||| || ||||| || || | | || |||| || || Sbjct 360 TGAAACAGTTTCACGAATACCATCAATGTCTACTGGAGGAGTATCAATGAAGGTAATAAT 419 Query 41420 GAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGT 41478 || |||| || || || | ||| | || ||||| | ||||||||||| || | || Sbjct 420 AAATACAT-AAGTTGCCGTCAATAAGGTAGGGATCATAAAAACACCAAACCATCCAATGT 478 Query 41479 ATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | || ||||| || |||||||| | ||||| ||| || Sbjct 479 AAAGACGGTTTTCAGTGCTAGTTATCCAGTAACAGAA 515 >seq279245 Length=1567 Score = 118 bits (130), Expect = 3e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 40941 CCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCT 41000 || ||||| || | || ||||| | |||||| |||| |||||| || ||||||||||| Sbjct 680 CCGCCAAATACCCTAGCTACGCCTAACATATGAAATGAGTGCATAAGGATGTTGTGTTCA 739 Query 41001 GCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAG 41060 || ||||| |||| |||||| ||||| || ||| || ||||| ||||||||||| ||| Sbjct 740 GCCTGGAATACAATCATGAAATTGAAAGTACCAGAGACTCCTAGAGGCATACCATTAGAA 799 Query 41061 AAAGAACCCTGACCGAATGG 41080 ||| || ||||||| ||| Sbjct 800 AAACTTCCTTGACCGATTGG 819 >seq79154 Length=5071 Score = 91.5 bits (100), Expect = 4e-14 Identities = 114/155 (74%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 40537 AGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTCTGTC 40596 |||||||||| ||||| ||||| || || || ||||| | ||||||||| || | | Sbjct 4712 AGTCTAGAGGGAAGTTATGAGCATTGCGTTCATGCATAAATTCCATACCAAGGTTAGCAC 4771 Query 40597 TGTTAAGAACATCAGCCCAAGTAGGAA-TGACTTTACCATTAGCGTCTACTACTGACTGG 40655 ||| | | |||||||||||| || | || ||| | | ||| |||| || ||| Sbjct 4772 GGTTGATGATATCAGCCCAAGTTTTAATTTACACGACCCTGACTGTCAACTATAGATTGG 4831 Query 40656 TTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGT 40690 || || || |||||||| ||||| ||||||||||| Sbjct 4832 TTGAAATTGAAACCATTTAGGTTGAAAGCCATAGT 4866 >seq121469 Length=13774 Score = 84.2 bits (92), Expect = 6e-12 Identities = 135/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 40562 ACGCTCGTGCATTACTTCCATACCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGG 40621 ||| || ||||| ||||||||||| || || | ||| | | ||| |||||||| Sbjct 4754 ACGTTCATGCATAACTTCCATACCAAGGCTAGCACGGTTGATGATATCGGCCCAAGTGTT 4695 Query 40622 AATGACTTTACCATTAGCGTCTACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAA 40681 ||| || | || | | || ||||| || ||||| || || |||||||| ||||| || Sbjct 4694 AATTACATGACACTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTCAGGTTGAA 4635 Query 40682 AGCCATAGTAGATATACCCATGGAGGTAAGCC--ATATGCCAATAACCGGGAAAGCACCA 40739 ||||||||| ||||| | | ||||| || |||| || | || || ||||| | Sbjct 4634 AGCCATAGTGCTGATACCTAAAGCGGTAAACCAGATATACCTACTACAGGCCAAGCAGCT 4575 Query 40740 AGAAAGAAGTGTA 40752 |||||||||| Sbjct 4574 CAGAAGAAGTGTA 4562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143174794842120