Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq227670 116 7e-21 seq218976 102 1e-16 seq29975 98.7 2e-15 seq183807 91.5 3e-13 seq142480 89.7 9e-13 seq250116 87.8 3e-12 seq256924 84.2 4e-11 >seq227670 Length=5094 Score = 116 bits (128), Expect = 7e-21 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| |||| |||| || ||||| || || | |||||| |||||| Sbjct 293 ATTTGCATGCCACCCCTCAGATGAAGAACAAGATGTAAGGTGGACTCTTTCTGAATATTG 234 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | || || ||| || | ||| || | | ||| || | |||||| || Sbjct 233 TAGTCAGCCAGGGTCCTTCCATCCTCAAGTTGCTTGCGG--AAAGATCAGTCTCTGCTGG 176 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| ||||| || ||||||| || | ||| ||||||||||||| Sbjct 175 TCTGGAGGAATCCCTTCCTTATCCTGAATTTTGGCCTTCACATTGTCAATAGTATCGGAA 116 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || || || || || || || || || ||||| || ||||| Sbjct 115 CTTTCAACTTCAAGGGTGATGGTCTTTCCAGTAAGTGTCTTGACAAAGATCTGCAT 60 >seq218976 Length=24853 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || || ||||| | || | ||| || || || ||||||| Sbjct 11094 ACCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 11035 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | | ||| || | || |||||||| ||||| || | ||| || || || || Sbjct 11034 AAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGG 10975 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || || || || |||| ||| | ||| || || |||||||||||||| Sbjct 10974 AATCCCTTCCTTGTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCGGAAGACTCAAC 10915 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || || || || || ||||| ||||| || || || ||||| || Sbjct 10914 CTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 10864 >seq29975 Length=3370 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | ||||| ||| || |||||| || || | | || | ||| | Sbjct 2319 ACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGCAAGTGTATGATCATCCTTA 2378 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 ||||||||||| |||| | |||||| |||||||| | || ||||||||||| |||| Sbjct 2379 AATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGGGAATTCCTTCTTTGTCTTCA 2438 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || || | ||| | ||| ||| || | |||| || || || ||||| || || || Sbjct 2439 ATCTTTGCTTTAACATTGTTAATGGTGTTGGAACTCTTCACATCCAGAGTAATGGTCTTT 2498 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | || ||||| ||||| |||||||| Sbjct 2499 CCAATGAGAGTTTTAACAAAGATTTGCAT 2527 >seq183807 Length=6005 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 193226 AAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTAT 193285 ||| || | |||||| || || ||||| || ||||| ||||| || ||||||| || | Sbjct 6005 AAAGATCAGTCTCTGCTGGTCTGGAGGAATCCCTTCCTTATCCTGAATTTTGGCCTTCAC 5946 Query 193286 ATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTT 193345 ||| ||||||||||||| |||||||| || || || || || || || || || || Sbjct 5945 ATTGTCAATAGTATCGGAACTTTCAACTTCAAGGGTGATGGTCTTTCCAGTAAGTGTCTT 5886 Query 193346 TACAAATATTTGCAT 193360 ||||| || ||||| Sbjct 5885 GACAAAGATCTGCAT 5871 >seq142480 Length=7342 Score = 89.7 bits (98), Expect = 9e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 193197 GTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATT 193256 |||||| ||| || ||||||||||| |||||||| | |||||| |||||||||||||| Sbjct 4996 GTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATG 5055 Query 193257 CCTTCTTTATCTTG 193270 ||||||||||| || Sbjct 5056 CCTTCTTTATCCTG 5069 >seq250116 Length=2524 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| || ||||| || | ||||| || || || || || ||||| || ||||| ||| Sbjct 30 TGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATT 89 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||| | ||| || || || || ||| || || ||||||||||| || || Sbjct 90 TTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCG 149 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| |||||||| Sbjct 150 GTCAGAGTTTTAACAAAGATTTGCAT 175 >seq256924 Length=5511 Score = 84.2 bits (92), Expect = 4e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || |||||||| | || || || || ||||| ||||||||||| |||||||| Sbjct 4452 TGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGTATC 4393 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || ||| ||||||| | | || ||||| ||||| || |||||| || Sbjct 4392 TTGGCCTTAGCATTGTCGATAGTATTGCTGAATTCGACTTCCAGAGTAATGGTTTTA-CT 4334 Query 193335 GTTAGCGTTTTTACAAATAT-TTGC 193358 | ||| ||||| || ||||| |||| Sbjct 4333 GGTAGAGTTTTCACGAATATCTTGC 4309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896177460657600