Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq250116 127 4e-24 seq29975 107 4e-18 seq183807 104 5e-17 seq45869 95.1 2e-14 seq269538 93.3 8e-14 seq261322 93.3 8e-14 seq260619 91.5 3e-13 seq68649 87.8 4e-12 seq256924 86.0 1e-11 seq142480 86.0 1e-11 >seq250116 Length=2524 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || | ||| | |||| |||||| ||| || |||||| Sbjct 174 ATCCCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 233 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||||| |||| || | ||||| ||||||||||| | |||||| ||||| || Sbjct 234 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGA 293 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| ||| |||||| || | || || || Sbjct 294 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCG 353 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || || || | ||| |||| |||||||||||| Sbjct 354 ACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 403 Score = 95.1 bits (104), Expect = 2e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 192362 AATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGAT 192421 |||||| | |||||| |||| || | ||||| ||||||||||| | ||||| || | Sbjct 1 AATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGT 60 Query 192422 CAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACG 192481 | || || || ||||| || ||||| |||||| ||| |||||| || | ||||| Sbjct 61 CTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGC 120 Query 192482 ATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || || || || || | ||||||| ||| || ||||| Sbjct 121 TCTCGACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTTTAACAAAGATTTGCAT 175 >seq29975 Length=3370 Score = 107 bits (118), Expect = 4e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||| || | ||||| || || | ||| | |||| ||| ||| || ||||| ||||||| Sbjct 2300 ACCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGA-ATATTGTAATCAG 2358 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | ||| | ||||| | |||||||| ||| |||| | |||||| |||||||| | | Sbjct 2359 CAAGTGTATGATCATCCTTAAATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGG 2418 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG-ACGATTCT 192486 | ||||||||||| |||| || || ||| ||||| | || | | | || ||| Sbjct 2419 GAATTCCTTCTTTGTCTTCAATCTTTGCTTTAACATTGTTAATGGTGTTGGAACTCTTC- 2477 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||||||||| || ||| | | ||||||| ||| || ||||| Sbjct 2478 ACATCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 2527 >seq183807 Length=6005 Score = 104 bits (114), Expect = 5e-17 Identities = 134/184 (73%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||||| | |||| | |||| || | ||||| ||||||||||| | || Sbjct 5610 GATGTTGTAATCAGCAACTGTTTGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCT 5551 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||| || || || ||||| || ||||| || ||| |||||||||| |||| Sbjct 5550 CTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTAGCTTTTACATTATCAATAGT 5491 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT-TTTAATAAATATCT 192532 || || || || || ||||| ||||| || || || | || || || |||||||| Sbjct 5490 GTCAGAGCTCTCGACCTCAAGAGTGATGGTCTTTCCGGTGAGCGTCTTAAACAAATATCT 5431 Query 192533 GCAT 192536 |||| Sbjct 5430 GCAT 5427 >seq45869 Length=5042 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||||| || || ||| |||| || | || || || || ||||| |||| | Sbjct 4383 ATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCGC 4442 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || ||||| || ||||| || ||||| || ||| ||| ||||| |||| Sbjct 4443 TGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGTG 4502 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || |||||| ||||| || || || || || || || | ||||| | || |||||| Sbjct 4503 TCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAGATCTGC 4562 Query 192535 ATTTT 192539 ||||| Sbjct 4563 ATTTT 4567 >seq269538 Length=12246 Score = 93.3 bits (102), Expect = 8e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 192333 ATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392 ||| | ||||| |||||| ||| ||||| || | | || || |||| || | || Sbjct 644 ATGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGGCCATCCTCAAGCTG 585 Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 |||||||||||||| | ||||||||||| ||||| || ||||| || || ||||| || Sbjct 584 CTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTT 525 Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 ||| ||||| |||| ||| || || || || | || || || || ||||| Sbjct 524 TGCTTTCACATTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGT 465 Query 192513 TAATGTTTTAATAAATATCTGCAT 192536 | || || | ||| |||||||| Sbjct 464 AAGAGTCTTCACAAAGATCTGCAT 441 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||||||| || | || | || | || | ||||| || || ||||| Sbjct 214 ATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCT 155 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | | |||| || | ||| || ||||||||||| |||||||| || || || Sbjct 154 GCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGA 95 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || ||| ||||| |||| |||||| || Sbjct 94 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATAGTATCTGAACTCTCA 35 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGT 192518 || || | |||||| || || || || ||||| Sbjct 34 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGT 3 >seq261322 Length=6793 Score = 93.3 bits (102), Expect = 8e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || |||| || ||||| |||| || | || ||||| || || || |||| Sbjct 4395 GATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCG 4454 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || ||||| || ||||| || ||||| || ||| || ||||| || | Sbjct 4455 CTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGT 4514 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| || ||||| || | |||||||| || || || | || || | ||| ||||| Sbjct 4515 GTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTG 4574 Query 192534 CATTTT 192539 |||||| Sbjct 4575 CATTTT 4580 >seq260619 Length=5677 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | || || || | ||| | |||||| || || |||||| Sbjct 418 ATGCCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCA 477 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || | || || | || || || |||||||| | ||||| || || || Sbjct 478 GCTAGAGTACGACCGTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGG 537 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || ||| ||||| || | ||||| ||| Sbjct 538 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTGTCAATGGTGTCTGAGCTTTCC 597 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || ||||| | ||||||| |||||||||||| Sbjct 598 ACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 647 >seq68649 Length=3576 Score = 87.8 bits (96), Expect = 4e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || |||| || ||||| |||| || | || || || || || || || || Sbjct 2478 GATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGCTTTCCCGCGAAAATCAACCT 2419 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || ||||| || ||||| || || || || ||| || ||||| || | Sbjct 2418 CTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCAATGGT 2359 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || || ||||| |||| ||||| || || || |||| || || | ||| ||||| Sbjct 2358 ATCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCACAAAGATCTG 2299 Query 192534 CATTTT 192539 |||||| Sbjct 2298 CATTTT 2293 >seq256924 Length=5511 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/207 (70%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 |||| ||||| ||| | | ||| ||| | || || | || || || |||| || Sbjct 4515 ACTAGATGTAGAGTTGATTTTTTCTGGATGCTGTAGTCCGCCAAGGTGCGGCCATCCTCG 4456 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | || ||||||||||| || | || || || || || || ||||||||||| |||||| Sbjct 4455 AGCTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGT 4396 Query 192448 ATTTTATTTTTTACATTAGTTATAGAAT--CTGACGATTCTACTTCTAGAGTAATGGTTT 192505 || || || |||| |||| || |||| |||| ||||| ||||||||||||| Sbjct 4395 ATCTTGGCCTTAGCATTGTCGATAGTATTGCTGA--ATTCGACTTCCAGAGTAATGGTTT 4338 Query 192506 TACCAGTTAATGTTTTAATAAATATCT 192532 || | | || ||||| | ||||||| Sbjct 4337 TA-CTGGTAGAGTTTTCACGAATATCT 4312 >seq142480 Length=7342 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||||| | |||| |||| ||||||||||| |||||||| || | |||| Sbjct 4978 ATGTTGTAATCAGCCAGGGTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTC 5037 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 || |||||||| ||||| ||||||||||| || Sbjct 5038 TGCTGATCAGGAGGTATGCCTTCTTTATCCTG 5069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980580111693000