Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq256924 98.7 2e-15 seq45869 96.9 6e-15 seq260619 91.5 3e-13 seq250116 91.5 3e-13 seq269538 89.7 9e-13 seq261322 89.7 9e-13 seq260618 89.7 9e-13 seq227670 87.8 3e-12 seq68649 84.2 4e-11 >seq256924 Length=5511 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/144 (76%), Gaps = 5/144 (3%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || |||||||||||||| | || || ||||| || || ||||||||||| |||||||| Sbjct 4452 TGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGTATC 4393 Query 171984 TTATTTTTTACATTAGTTATAGTAT--CTGACGATTCTACTTCTAGAGTAATGGTTTTAC 172041 || || |||| ||||||| |||| |||| ||||| ||||||||||||||| Sbjct 4392 TTGGCCTTAGCATTGTCGATAGTATTGCTGA--ATTCGACTTCCAGAGTAATGGTTTTA- 4336 Query 172042 CAGTTAATGTTTTAATGAATATCT 172065 | | || ||||| | |||||||| Sbjct 4335 CTGGTAGAGTTTTCACGAATATCT 4312 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/132 (77%), Gaps = 6/132 (5%) Strand=Plus/Minus Query 171943 ATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTA 172002 |||| || ||||| || || || |||||||| |||||||| || || |||| | Sbjct 4315 ATCT-TGCTGGTCTGGAGGGAT-CCTTCTTTGTCTTGTATCTTGGCCTTAGCATTGTCGA 4258 Query 172003 TAGTAT--CTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAA 172060 |||||| |||| |||| || || |||||||||||||||| || | ||||| ||||| Sbjct 4257 TAGTATTGCTGA--ATTCGACCTCCAGAGTAATGGTTTTACTGGTCAGAGTTTTCATGAA 4200 Query 172061 TATCTGCATTTT 172072 |||||||||||| Sbjct 4199 TATCTGCATTTT 4188 >seq45869 Length=5042 Score = 96.9 bits (106), Expect = 6e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| | || || ||| | || || | || || || || || || |||| Sbjct 4382 AATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCG 4441 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| ||||| || ||||| || ||||| || ||| ||| ||||| ||||| Sbjct 4442 CTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGT 4501 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || |||||| ||||| || || || || || || || | ||||| | ||| ||||| Sbjct 4502 GTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAGATCTG 4561 Query 172067 CATTTT 172072 |||||| Sbjct 4562 CATTTT 4567 >seq260619 Length=5677 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || || || | ||| | |||||| ||| || ||||| Sbjct 418 ATGCCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCA 477 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || || || |||| || | || || || ||||| || | ||||| ||||| || Sbjct 478 GCTAGAGTACGACCGTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGG 537 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || || ||| ||||| || || ||||| ||| Sbjct 538 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTGTCAATGGTGTCTGAGCTTTCC 597 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || ||||| | ||||||| ||||||||||| Sbjct 598 ACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 647 >seq250116 Length=2524 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || | ||| | |||| |||||| || || ||||| Sbjct 174 ATCCCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 233 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| | || || | ||||| |||||||| || | |||||| || || || Sbjct 234 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGA 293 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || ||| ||| |||||| || || || || || Sbjct 294 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCG 353 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || || || | ||| |||| ||||||||||| Sbjct 354 ACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 403 >seq269538 Length=12246 Score = 89.7 bits (98), Expect = 9e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| || | || | || | || | ||||| ||| || |||||| Sbjct 214 ATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCT 155 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | | | | || || | ||| || |||||||| || |||||||| ||||| || Sbjct 154 GCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGA 95 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || ||| ||||| ||||||||||| || Sbjct 94 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATAGTATCTGAACTCTCA 35 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 || || | |||||| || || || || ||||| Sbjct 34 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGT 3 >seq261322 Length=6793 Score = 89.7 bits (98), Expect = 9e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || ||||| || ||||| |||| ||| ||||| ||||| || ||||| || ||||| || Sbjct 4432 TGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATC 4491 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || ||||| || || ||||| || ||||| || | |||||||| || || Sbjct 4492 TTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCC 4551 Query 172044 GTTAATGTTTTAATGAATATCTGCATTTT 172072 || | || || | || ||||||||||| Sbjct 4552 GTCAGGGTCTTCACAAAGATCTGCATTTT 4580 >seq260618 Length=7988 Score = 89.7 bits (98), Expect = 9e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| | ||| | | | | || ||||| || || ||||||||||| || || Sbjct 579 AATATTGTAATCGGCTAATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAACCT 520 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 || ||||| ||||| || || ||||| || || || || ||||| || || || Sbjct 519 TTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATCTTGGCCTTTACGTTGTCAATGGT 460 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || ||| || || || ||||| || || ||||| || || || | ||| || || Sbjct 459 GTCGGAGCTTTCCACCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACGAAGATTTG 400 Query 172067 CATT 172070 |||| Sbjct 399 CATT 396 >seq227670 Length=5094 Score = 87.8 bits (96), Expect = 3e-12 Identities = 161/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| || | || | || | || | || ||| ||| || |||||| Sbjct 516 ATGCCACCTCTAAGACGAAGAACAAGGTGCAGCGTTGACTGTTTCTGAATGTTGTAATCT 457 Query 171900 GATAAAGATCGTT-CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | |||||| || | || || | ||| | |||||||| || |||||||| |||| || Sbjct 456 G-CCAAGATCCTTCCATCTTCAAGTTGCTCTCCAGCAAACATCAATCTCTGCTGGTTCGG 398 Query 171959 TGGTAT-TCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATT 172017 || || ||| |||| ||||| | || ||| ||||| | || |||||||| | Sbjct 397 AGGAATACCCTCCTTTGTCTTGGACCTTTGCTTTAACATTGTTGATGGTATCTGAACTCT 338 Query 172018 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | || || | |||||| || || || || ||||| |||| |||| ||||| Sbjct 337 CAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACATATATTTGCAT 286 >seq68649 Length=3576 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || || || ||||| || ||||| ||||| ||||| || ||||| || || || || Sbjct 2441 TGCTTTCCCGCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATC 2382 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || ||||| || ||||| || || ||||| |||| ||||| || || || Sbjct 2381 TTAGCCTTAACATTGTCAATGGTATCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCC 2322 Query 172044 GTTAATGTTTTAATGAATATCTGCATTTT 172072 |||| || || | || ||||||||||| Sbjct 2321 GTTAGGGTCTTCACAAAGATCTGCATTTT 2293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901637875644000