Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq67946 118 1e-20 seq24640 91.5 2e-12 >seq67946 Length=21248 Score = 118 bits (130), Expect = 1e-20 Identities = 177/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||| ||||| |||||||| ||||| || || || || | |||| || || ||| Sbjct 3405 GAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCGGCAACCTGG 3346 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| || || |||||||| ||||||||||| |||||| ||| Sbjct 3345 ACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAA 3286 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || || || |||| || || | || || | || |||||| |||| Sbjct 3285 AAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGT-GACG 3227 Query 869813 -GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 || |||| | ||| || || || || || ||||||| || ||| ||| || ||||| Sbjct 3226 AGTATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCATGGCTTTCTTGTA 3167 Query 869872 CATCTCCCA 869880 ||| ||||| Sbjct 3166 CATTTCCCA 3158 >seq24640 Length=3004 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| | |||||| |||||| ||||| || || ||||||| || Sbjct 1709 GCGGCTAACTACCTGAATATCAAGAGTCTGCTTGATCTGACCTGTCAGACTGTGGCAGAC 1768 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 |||||||| || ||| | || |||||||| || ||||| |||||||||||| ||| Sbjct 1769 ATGATCAAAGGAAAGACTCCGGAGGAGATTCGAAAGACTTTTAACATCAAGAACG 1823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6081766441310060