Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq218976 123 2e-23 seq260618 120 2e-22 seq45869 116 2e-21 seq260619 104 2e-17 seq269538 100 2e-16 seq30399 95.1 8e-15 seq261322 84.2 1e-11 >seq218976 Length=24853 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | ||| | ||| |||||| ||| || || |||||||| |||| Sbjct 11095 CACCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 11036 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || || || | || || | || |||||||| ||||||||||||||||| ||| | | Sbjct 11035 CAAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGG 10976 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || |||| |||| ||| | ||||||| || || Sbjct 10975 GAATCCCTTCCTTGTCCTGGATCTTGGCTTTC-ACATTGTCGATGGTGTCGGAAGACTCA 10917 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | |||||||| || || |||| ||||| || ||||||||||| Sbjct 10916 ACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 10867 >seq260618 Length=7988 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | ||||| || || || ||| || || ||||||||||| | Sbjct 395 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 336 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | ||| ||||||||||| ||||| | |||||| ||| | || Sbjct 335 AGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 276 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| |||||| | | ||||| ||| | |||||| |||||| Sbjct 275 ATACCTTCTTTGTCCTGAATTTT-GGCCTTAACATTGTCAATGGTGTCAGAACTTTCCAC 217 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || || || || |||||||| ||||| Sbjct 216 CTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 169 >seq45869 Length=5042 Score = 116 bits (128), Expect = 2e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || ||||||||||| | || || ||| | || || | || |||||||| || | Sbjct 4375 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 4434 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 |||| |||||||| || | || | |||||| ||||| ||| || | || |||| | Sbjct 4435 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTT-AGCTTTGACATTG 4493 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | |||||||| ||||| || |||| ||||||||| || || || | ||||| || Sbjct 4494 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 4553 Query 33739 AAGATCTGCAT 33749 ||||||||||| Sbjct 4554 AAGATCTGCAT 4564 >seq260619 Length=5677 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || ||||| |||||| || ||||||||||| | Sbjct 421 CCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCAGCT 480 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || ||||| ||||| |||| | |||||| ||| | || Sbjct 481 AGAGTACGACCGTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 540 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||| ||||| || || | || ||||| ||| | |||||| ||| ||| Sbjct 541 ATGCCTTCCTTGTCCTGGATCTT-GGCTTTAACATTGTCAATGGTGTCTGAGCT---TTC 596 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| |||| ||||| || || || || | ||||| ||||| |||||||| Sbjct 597 CACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 647 >seq269538 Length=12246 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||||||| ||||||| ||| ||||| ||| || || |||||||| || | Sbjct 439 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 380 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | |||| || | |||||| || ||||| ||||||||||| || ||| | || Sbjct 379 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 320 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | ||| || ||||| ||| || || || |||| ||| | ||| || ||| || Sbjct 319 ATACCCTCCTTGTCTTGAATCTT-TGCTTTCACATTGTCAATGGTATC---TGAACTCTC 264 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || || || || || ||||| || ||||| Sbjct 263 AACCTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 213 >seq30399 Length=1829 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| || ||| ||| || || |||||||| || | Sbjct 1200 ACCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 1141 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || ||||| || ||||| ||||| ||||| | |||||| ||| | || Sbjct 1140 TAGGGTGCGGCCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGG 1081 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGA---TT 33697 | ||||| || || || || || | | | |||| |||||| ||| || Sbjct 1080 AATGCCTTCCTTATCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTC---TGAGCTTT 1025 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || |||| || ||||| ||||| || | || || || |||||||||||| Sbjct 1024 CGACCTCAAGGGTAATCGTCTTACCCGTGAGAGTCTTCACGAAGATCTGCATA 972 >seq261322 Length=6793 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | || || ||| ||| || || |||||||| || | Sbjct 4349 CACCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 4408 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || || || | || || | || || ||||| |||||||| |||||||| ||| | | Sbjct 4409 CTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTG 4468 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699 | | ||||| ||||| ||| || || ||||| |||| |||||| ||| || Sbjct 4469 GAATGCCTTCCTTGTCTTGAATCTTAGCCTT-AACATTGTCAATGGTGTCTGATGACTCT 4527 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || || | || || |||||||||||||| Sbjct 4528 ACCTCCAAGGTAATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327465400185600