Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq67946 167 2e-36 >seq67946 Length=21248 Score = 167 bits (184), Expect = 2e-36 Identities = 387/580 (67%), Gaps = 4/580 (1%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| |||||||| |||| | || ||| |||||||||| ||||| ||| || || | Sbjct 3132 TGTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCATGGCATCTTTCT 3191 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA--CTTAGCACATTGGATTGCATTAAAACC 43824 |||| ||||||||||| ||| | | | || || ||| | ||| | | | | || Sbjct 3192 GGACGGCAGAAGAAGTCGATCTCTCCACCGATACTCGTCAC-TGGGAAAACCTAACATCC 3250 Query 43825 ACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884 |||| ||||| || || ||| | || |||||||| || ||||| || || Sbjct 3251 GGT-GAAAGGCATTTCATCACTCATGTTCTTGCCTTTTTTGCCGCCTCAGACGGCATCGT 3309 Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944 || || | | | | |||| | |||| || || | | || || || ||| Sbjct 3310 TTTAGAGAACCTCGCTGGAAGGTTCATGAAAGATGTCCAGGTTGCCGAGGCTCGTGCTTT 3369 Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004 |||||||| ||||| ||||| || ||||| ||||| || ||||||||| | ||| | || Sbjct 3370 CTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGTTTGCTGTTGGA 3429 Query 44005 TACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC 44064 |||||||||| ||| |||| ||| |||||| ||| || || ||| | || Sbjct 3430 GTCGTACATCAAGGATTCTGACGAAAAGAGCAAATTGTTCCGTGCAATTGAGACAATCCC 3489 Query 44065 TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGG 44124 | || || | || || | ||||||||| ||||| || || |||| | Sbjct 3490 TTGTGTTGAAAAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGGGTCCGAAACTTTCGC 3549 Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGC 44184 || || | || || ||||| ||| ||||| |||||||| ||| || | Sbjct 3550 GGAGCGTTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTTCTGTTC 3609 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 ||||||||||| || ||||| || || |||||||| || || || |||||||||||||| Sbjct 3610 GATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACCTTCTCAAATGAGTTAAT 3669 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | || ||||| || || || |||||||| || ||| Sbjct 3670 TTCAAGAGACGAAGGTTTGCACTGTGATTTTGCGTGTTTG 3709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395958333625900