Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq16411 95.1 1e-14 seq45135 87.8 2e-12 >seq16411 Length=4982 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/289 (68%), Gaps = 12/289 (4%) Strand=Plus/Plus Query 11905 CGGCACATTGGCTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTA 11964 |||| |||||| | | ||||||||| ||| | || || | || |||||| ||| | Sbjct 134 CGGCGCATTGGTACACGGTGAATTACCGGGAAGCGTACGGGATATTCGCGTGCAATGGGA 193 Query 11965 TTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACC- 12023 ||||||||||||||||||| || ||||| || | |||||||||| | |||||| ||| Sbjct 194 TTCTCTTCAACCACGAGTCTCCACGTCGGGGTGAGAATTTCGTGACGAGGAAGATTACCC 253 Query 12024 -----GATGGTATCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACC 12078 | || | | | |||||| ||| |||| || | || ||||| || Sbjct 254 GGGCTGTAGGGAGGATAAAAATCG-GGC--TACAGAGCAAGGTTTTT---TTGGGTAATT 307 Query 12079 TCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTAC 12138 | | || ||||||||||| ||| |||||||| ||||| |||||| | | | Sbjct 308 TACAGGCGTCAAGGGACTGGGGCTTTGCTGGAGACTATGTAGAAGCAATGTGGATGATGC 367 Query 12139 TTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACA 12187 | || ||||| | | ||||| || || || || |||| ||| |||| Sbjct 368 TGCAGCAAGAGAAACCAGACGACTACGTTGTGGCAACGGAGGATTCACA 416 >seq45135 Length=7738 Score = 87.8 bits (96), Expect = 2e-12 Identities = 187/277 (68%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || |||||||| |||||||| || ||||| || || || || | |||||||| || Sbjct 452 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 393 Query 14213 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 | ||| |||| | |||| | || || || ||||| ||||| || || || ||||| Sbjct 392 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 333 Query 14273 GGTTGATTTTCACGG-GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 14331 ||| | ||| || || ||||| | ||| | ||||| || || |||||||| Sbjct 332 GGT-GCTTTAGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACACCCAC 274 Query 14332 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGC 14391 ||||| ||| ||||| | | || | ||| || || || || || ||||| || Sbjct 273 AAACAACTCAACAAACTCTGACGCTGCACAAGAGAAAAATGGCACACCAGCCTCACCAGC 214 Query 14392 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | |||| || | |||||||| || || |||||| Sbjct 213 TACTGCTCTAGCTAAAAGGGTCTTTCCAGTACCTGGT 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616045102560800