Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq32571 125 8e-24 seq45135 118 1e-21 >seq32571 Length=4521 Score = 125 bits (138), Expect = 8e-24 Identities = 304/449 (68%), Gaps = 16/449 (4%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 1521 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 1580 Query 9586 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | || | ||||| || ||| || | ||||||||||| || ||||| |||||||| Sbjct 1581 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 1638 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701 | || ||||||| ||||||||| || | | | | |||| | | |||| || | Sbjct 1639 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 1696 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT-CGCGAGCGACTTCAAAG 9760 | |||||||| ||||||| || || ||||| || ||||| | | | ||| ||| Sbjct 1697 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA- 1755 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || || ||| || ||||||||||||||||| || || | || | ||| Sbjct 1756 AGATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAACCTGAA 1815 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 |||| || || || ||| | |||||| ||||| || || || | || || || Sbjct 1816 -ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCC 1874 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT- 9938 ||||| || ||| | || || ||||| ||||| | | ||| || | ||| Sbjct 1875 AGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAA--TACGAGCCCCTACTGCAGTA 1932 Query 9939 -ATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 |||||||||||| ||| | ||| || || Sbjct 1933 AATCTCTCAGGTTTCTTCAAAAATTCTAC 1961 >seq45135 Length=7738 Score = 118 bits (130), Expect = 1e-21 Identities = 197/279 (71%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || |||||||| || |||||||| || |||| |||||||| | Sbjct 452 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 393 Query 9674 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | ||| |||| | |||| ||||||| ||||||||||||||||| || || || || Sbjct 392 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 333 Query 9734 GGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 9789 ||| ||| | || || ||||| | ||||| || || || | || |||||||| Sbjct 332 GGT--GCTTTAGACTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCTCCCACACC 277 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 ||||||| ||| ||||| | || || | ||| || || || ||| || ||||| Sbjct 276 CACAAACAACTCAACAAACTCTGACGCTGCACAAGAGAAAAATGGCACACCAGCCTCACC 217 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || | |||| || | ||| ||||| || |||||||| Sbjct 216 AGCTACTGCTCTAGCTAAAAGGGTCTTTCCAGTACCTGG 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581006642823200