Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq67946 122 9e-23 seq186130 86.0 7e-12 seq301058 82.4 8e-11 seq252537 82.4 8e-11 seq166758 82.4 8e-11 >seq67946 Length=21248 Score = 122 bits (134), Expect = 9e-23 Identities = 288/424 (68%), Gaps = 16/424 (4%) Strand=Plus/Minus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| | ||||| ||||| || || ||||| || || | | |||||||| | || Sbjct 3690 TGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGGCATTAACCCC 3631 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 || || ||||||||||| || | ||||||| || |||||||| || ||||| ||||| Sbjct 3630 CGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCCTTCAACACAA 3571 Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGA---AGTCATCCAAGTCTGAGCC 74939 ||||| || || | || | |||||| | | ||||| | |||||| | ||| Sbjct 3570 GCAAAAGCCACCAAACGCTCCGCGAAAGTT---TCGGACCCATCGATCCAACGAAGGGCC 3514 Query 74940 CATTCAGCTTTTCGTTTGACCGC-AGGGACAGTATCGATCGCTTGGAAGAGGCTTGC-CT 74997 |||| || ||| ||| | | | ||||| || || || || |||| | |||| || Sbjct 3513 CATTTCGC-CTTCTTTTCAACACAAGGGATTGTCTCAATTGCACGGAACA-ATTTGCTCT 3456 Query 74998 TCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCG 75057 | || || | |||||||| | | || | || | |||| |||| ||||| || Sbjct 3455 TTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATCTCGGAATGGATAT 3396 Query 75058 ACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT- 75115 ||| || ||| ||| || | ||||||| || ||||| |||| ||| ||||| || Sbjct 3395 TCTCAATG-GCGATTTGGAACCCATAGAAAGCACGAGCCTCGGCAACCTGGACATCTTTC 3337 Query 75116 -TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCA 75174 |||| | || ||| ||||| | ||||||||||| |||||||| ||||| || | Sbjct 3336 ATGAACCTTCCA--GCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAGGCAA 3279 Query 75175 GTAC 75178 | || Sbjct 3278 GAAC 3275 >seq186130 Length=17941 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1123 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1182 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 1183 TGAGCTACGAGAGC 1196 >seq301058 Length=6442 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 2844 GATTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 2903 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||| ||| Sbjct 2904 AACTGAGCTACGAGAGC 2920 >seq252537 Length=18481 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 288 GATTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 347 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||| ||| Sbjct 348 AACTGAGCTACGAGAGC 364 >seq166758 Length=7398 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1112 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1171 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 1172 TGAGCTATGAAAGCA 1186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545101146964000