Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq269538 158 8e-34 seq260618 107 1e-18 seq30399 102 5e-17 seq260619 87.8 1e-12 seq227670 87.8 1e-12 seq164539 86.0 4e-12 seq29975 84.2 1e-11 >seq269538 Length=12246 Score = 158 bits (174), Expect = 8e-34 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||||||||||| ||||||||| |||||| || ||||| || |||| | Sbjct 439 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 380 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | |||| |||||||||||||| ||||| || |||||||||||||| || || Sbjct 379 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 320 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| |||| ||| || | ||| || ||| ||||| || Sbjct 319 ATACCCTCCTTGTCT-TGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAAC 261 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || || || || || || || || || |||||||| |||||| Sbjct 260 CTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 212 >seq260618 Length=7988 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||| ||||| || || | || || | | ||||||||||| || || ||||| Sbjct 816 CTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAA 757 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | | ||| |||||||| || | |||||||||||| ||| ||| | || || Sbjct 756 GATCAGTCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTC-CTGAATTTTAGCCTTCACAT 698 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| || || |||||||| |||| ||||| ||||| || || || || |||| Sbjct 697 TGTCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTCTTCA 638 Query 34694 CAAAAATCTGCAT 34706 ||||||||||||| Sbjct 637 CAAAAATCTGCAT 625 >seq30399 Length=1829 Score = 102 bits (112), Expect = 5e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| || || | ||| || || |||| || || || ||||| || || Sbjct 1620 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 1561 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || || | ||| ||||| || || | |||||||||||| |||| || | ||||| Sbjct 1560 AATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATC-TTAGCCTTAACAT 1502 Query 34635 TA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 || ||| ||||| ||| ||||| |||| || || || || ||||| | || || | Sbjct 1501 TATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAA 1442 Query 34694 CAAAAATCTGCAT 34706 ||||||||||||| Sbjct 1441 CAAAAATCTGCAT 1429 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||| ||| |||||| || ||||| || || | || || || Sbjct 1190 AGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGG 1131 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || || ||||| || || | ||| ||||| || || | || ||| Sbjct 1130 CCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCC 1071 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||| || | || ||| | ||| |||||| ||| || || || | ||| Sbjct 1070 TTATCCTGGATC-TTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGT 1012 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||||| || | || ||||| || |||||||| Sbjct 1011 AATCGTCTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 973 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||| ||| |||||| || ||||| ||||| | || || || Sbjct 962 AGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGT 903 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | || || || || || || | | || || ||||| || | ||| ||| Sbjct 902 CCGTCCTCCAACTGCTTTCCAGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCC 843 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||| || | |||||| | ||||| || || ||||| || | ||| Sbjct 842 TTATCCTGGATC-TTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGT 784 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | ||||||||||| |||||||| Sbjct 783 GATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 745 >seq260619 Length=5677 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || ||||| ||||| | ||| || | |||| ||||| || || || ||||| Sbjct 1 TCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCAAGCTGCTTGCCCGCAAAG 60 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || | || ||||| || || | || ||||||||| |||||| | ||||| | Sbjct 61 ATCAACCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTA-GCCTTAACATT 119 Query 34636 AA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||| ||||| ||| || || || | ||| || || || || || || || ||||| Sbjct 120 GTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTCAC 179 Query 34695 AAAAATCTGCAT 34706 |||||| ||||| Sbjct 180 AAAAATTTGCAT 191 >seq227670 Length=5094 Score = 87.8 bits (96), Expect = 1e-12 Identities = 164/238 (69%), Gaps = 11/238 (5%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||||||||||| ||||||||| |||||| || ||||| || ||| | Sbjct 750 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTACA 691 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTG------GTCC 34593 || | | | | || |||||||||||||| ||||| || ||| ||| || | Sbjct 690 AGGTTCCTCCCATCCTCAAGTTGTTTACCAGCAAAAATCAAATGCTTCTGGGAGGAGAGG 631 Query 34594 GGCGGCACTC---CCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATT-GTGTCTTC 34649 || || | | ||||||||||| ||| |||| ||| | | | ||| || ||| Sbjct 630 GGGGGGATACGCTCCTCCTTGTCT-TGAATCTTTGCTTTGATGTTGTCATTGGTATCTAA 572 Query 34650 GCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || |||| || || || || || || | || || ||||||| |||||| Sbjct 571 ACTCTCAACCTCCAACGTAATTGTCTTCCCAGTCTAAGTCTTGACAAAAAATTGCATG 514 >seq164539 Length=4213 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || || ||| |||||| || || || || || | ||| || || | || ||||| || Sbjct 3965 TGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGC 4024 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||| || || || || | ||| ||||| || || | ||||||||||| ||| || Sbjct 4025 TTACCAGCGAAAATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTC-CTGAATCTT 4083 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | ||| || | || ||||| |||||||| |||| || || || || ||||| Sbjct 4084 AGCTTTCACATTGTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCGGT 4143 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 || || |||||||| |||||||| Sbjct 4144 CAAGGTCTTCACAAAGATCTGCAT 4167 >seq29975 Length=3370 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||| ||| || | ||| | || |||||||||||| || ||||| | | Sbjct 2301 CCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGCA 2360 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| | || || | || |||||| || |||||| ||| | ||||| || | || Sbjct 2361 AGTGTATGATCATCCTTAAATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGGGA 2420 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || |||||| ||| |||| |||||| | ||| |||| |||| ||| Sbjct 2421 ATTCCTTCTTTGTCTTCAATC-TTTGCTTTAACATTGTTAATGGTGTTGGAACTCTTCAC 2479 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || | | ||||| ||||| || ||||| Sbjct 2480 ATCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 2527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313543657558940