Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq260618 131 1e-25 seq250116 122 8e-23 seq269538 120 3e-22 seq260619 118 9e-22 seq45869 116 3e-21 seq183807 109 5e-19 seq261322 107 2e-18 seq30399 104 2e-17 seq29975 102 7e-17 seq46562 86.0 5e-12 >seq260618 Length=7988 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| |||||| | || || ||||| |||||| || Sbjct 169 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 228 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||||| ||||||||||| || ||||| || || Sbjct 229 GACACCATTGACAATGTTAAGGCCAAAATTCAGGACAAAGAAGGTATTCCACCAGACCAG 288 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| || ||| | || ||| | ||| || | ||||||||| Sbjct 289 CAGAGGTTGATCTTTGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCTGATTACAAC 348 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || ||||| ||||| | || ||||| || Sbjct 349 ATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGGAAT 398 >seq250116 Length=2524 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || || ||||| ||| | || |||||||| || || || Sbjct 403 ATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGTTCT 344 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || ||||||||||| |||||||| || || ||||| Sbjct 343 GACACCATTGATAATGTCAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAG 284 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||| | ||||| | || || | ||||||||| Sbjct 283 CAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACAAC 224 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||||| ||| | ||| | || | ||| | || ||||| || Sbjct 223 ATCCAAAAAGAGTCTACCCTTCATCTTGTCCTCCGTCTACGTGGTGGGAT 174 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||||||||| ||| |||| |||||||| || || || Sbjct 175 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTCA 116 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| |||||||||||||| ||||| || || || || || Sbjct 115 GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 56 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 ||| | | || | || || ||||| | ||||| Sbjct 55 CAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGA 21 >seq269538 Length=12246 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || ||| |||| || ||| | ||||| | || || || || Sbjct 212 CATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTC 271 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || ||| ||| ||||||||||| || || || || || || || Sbjct 272 AGATACCATTGACAATGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCA 331 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||| || | || || |||||| | || ||| | ||| || | || ||||| Sbjct 332 ACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTTGCAGACTACAA 391 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | ||| |||| ||||||||| | || || || Sbjct 392 CATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGGGAT 442 >seq260619 Length=5677 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||| || || || ||| |||| || ||||| |||||| || Sbjct 647 ATGCAGATATTTGTTAAAACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAAGCTCA 588 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || || || ||||| |||||||| || || || || Sbjct 587 GACACCATTGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 528 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || | |||||| || || | | ||||||||| Sbjct 527 CAGAGGCTGATCTTTGCAGGAAAGCAGCTTGAAGACGGTCGTACTCTAGCTGATTACAAC 468 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| || | || ||||| | ||| | || |||||||| Sbjct 467 ATTCAGAAAGAGTCAACTCTCCACTTGGTGCTCCGTCTTCGTGGTGGCAT 418 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || |||||| |||| || ||| | || || ||||| || ||| || Sbjct 420 CATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 361 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || || || |||||||| |||||||| || || || || Sbjct 360 TGACACCATTGACAATGTTAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 301 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || | || || | || ||||| || | || ||| | |||| || | |||||||| Sbjct 300 GCAAAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAA 241 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | || ||||| | ||| | || ||||| || Sbjct 240 CATCCAGAAGGAATCAACCCTTCACTTGGTGCTCCGTCTTCGTGGTGGAAT 190 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| |||| || ||| | || || ||||| || ||| ||| Sbjct 191 ATGCAAATTTTTGTGAAGACTTTGACTGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 132 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || |||||||| |||||||| || || || || Sbjct 131 GACACCATTGACAATGTTAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 72 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | || ||||| || | || ||| | |||| || | ||||||||| Sbjct 71 CAAAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAAC 12 Query 27168 ATTCAAAAGGA 27178 || || ||||| Sbjct 11 ATCCAGAAGGA 1 >seq45869 Length=5042 Score = 116 bits (128), Expect = 3e-21 Identities = 141/191 (74%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||||| || || ||| | || || |||||||| ||| || | Sbjct 4564 ATGCAGATCTTCGTGAAAACTCTTACGGGGAAGACGATCACGCTTGAAGTTGAATCGAGC 4505 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || ||||||||||| ||||| || ||||| || || Sbjct 4504 GACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCACCGGACCAG 4445 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||| || || | ||||| | || | | ||||||||| Sbjct 4444 CAGCGATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGACGTACTCTAGCTGATTACAAC 4385 Query 27168 ATTCA-AAAGG 27177 ||||| ||||| Sbjct 4384 ATTCAGAAAGG 4374 >seq183807 Length=6005 Score = 109 bits (120), Expect = 5e-19 Identities = 171/241 (71%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAA-ACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||||||||||| || || || ||||| ||| | || |||||||| || || || Sbjct 5427 ATGCAGATATTTGTTTAAGACGCTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGCTC 5486 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || ||| || ||||||||||| |||||||| || || ||||| Sbjct 5487 TGACACTATTGATAATGTAAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCA 5546 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || || ||||| | ||||| | || ||| | |||||||| Sbjct 5547 GCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCAAACAGTTGCTGATTACAA 5606 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACAC 27226 ||| ||| | ||||| ||| | ||| | || | ||| | || ||||| || ||||| | Sbjct 5607 CATCCAAGACGAGTCTACC-TCCATCTTGTCCTCCGTCTACGTGGTGGAAT-GCAAACTC 5664 Query 27227 T 27227 | Sbjct 5665 T 5665 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27004 AAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGG 27063 ||||||||||||| ||| |||| |||||||| || || || ||| | ||||| | | Sbjct 5659 AAACTCTGACCGGAAAGACTATAACTCTTGAGGTTGAGAGCTCAGACACCATTGATAATG 5718 Query 27064 TCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACG 27123 ||||| |||||| ||||||| ||||| || | || || || ||| | | || | | Sbjct 5719 TCAAAGCTAAAATTGAAGACAAGGAAGGTATTTCCCCAGACCAGCAGAGGCTGATCTTTG 5778 Query 27124 CCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGA 27183 | || ||| | | ||||| | || || | ||||||||||| ||||||||||| | Sbjct 5779 CTGGGAAATAGCTTGAAGATGGCCGAACACTTACTGATTACAACATCCAAAAGGAGTCCA 5838 Query 27184 CC 27185 || Sbjct 5839 CC 5840 >seq261322 Length=6793 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | ||||| | || || || | || Sbjct 4577 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATTACCTTGGAGGTAGAGTCATCA 4518 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || ||||||||||| |||||||| ||||| || || Sbjct 4517 GACACCATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATTCCACCAGACCAG 4458 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTACAA 27166 ||||| || || | |||||| || || | || || | ||| || | | || ||||| Sbjct 4457 CAGCGATTGATTTTCGCCGGTAAGCAGCTCGAGGA-TGGCCGAACGCTAGCTGACTACAA 4399 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||| ||| | || | || | ||| | || ||||| Sbjct 4398 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGTCTCCGTGGTGG 4351 >seq30399 Length=1829 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||| ||||| ||| |||| || || || |||||| || Sbjct 745 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACTATCACCCTAGAGGTGGAAAGTTCT 804 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || || || || || ||||| || || || ||||| Sbjct 805 GATACAATCGACAACGTTAAGGCTAAGATCCAGGATAAGGAAGGAATTCCCCCGGATCAG 864 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||| || || || ||||| ||| | || | | ||||||||| Sbjct 865 CAAAGGCTTATCTTCGCTGGAAAGCAGTTGGAGGACGGACGTACTCTAGCTGATTACAAC 924 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | |||||||| | ||| | || ||||| || Sbjct 925 ATCCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTACGTGGTGGTAT 974 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||| ||| | || ||| | || |||||| ||| Sbjct 1429 ATGCAGATTTTTGTTAAGACCCTCACCGGAAAGACCATCACTTTGGAGGTGGAAAGCTCC 1488 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| || || || || || || || Sbjct 1489 GACACCATTGATAATGTTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 1548 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||| || || || | || ||| | ||| || |||| |||||| Sbjct 1549 CAGAGGTTGATTTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAAC 1608 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || | || | ||| | || ||||| || Sbjct 1609 ATCCAGAAGGAGTCGACCCTTCACCTTGTCCTCCGTCTACGTGGTGGTAT 1658 >seq29975 Length=3370 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| | || ||| | |||||||| || ||| | ||| Sbjct 2527 ATGCAAATCTTTGTTAAAACTCTCATTGGAAAGACCATTACTCTGGATGTGAAGAGTTCC 2468 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||| | | || ||| ||| ||| ||||||||||||| || || | |||||| Sbjct 2467 AACACCATTAACAATGTTAAAGCAAAGATTGAAGACAAAGAAGGAATTCCCTCAGATCAA 2408 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||| ||| | || |||||||| | || | || || | |||||||| Sbjct 2407 CAAAGATTAGTATTTGGTGGAAAACAATTTAAGGATGATCATACACTTGCTGATTACAAT 2348 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 |||||||||||||| || | ||| | || ||| || Sbjct 2347 ATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAGT 2312 >seq46562 Length=4179 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/227 (69%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||| | || || ||| || | || || || || |||||| | || Sbjct 3156 ATGCAGATATTTGTCAAATCACTCACAGGCCAGACCATGACACTAGATGTGGAAACCTCT 3215 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| | ||||| | || ||| ||| ||| | | || || Sbjct 3216 GACACCATTGATAGTGTGAAAGACAAAATCTATGAAAAAACAGGGATAAAAGCAGAACAT 3275 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | ||||||| | ||||| ||| ||||| | || || || ||||| || Sbjct 3276 CAGAGGTTAATATTTGGTGGCAAGCAACTGGAAAATGGT---ACTGTGAAAGATTATGAC 3332 Query 27168 ATTCAAAAG-GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTG 27213 | ||||||| ||||| || | ||| | ||| | || |||| |||| Sbjct 3333 A-TCAAAAGAGAGTCCACTCTTCATCTTGTTCTTCGCTTGCTTGGTG 3378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433282758327740