Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq45869 136 3e-27 seq260619 116 2e-21 seq250116 107 1e-18 seq183807 96.9 2e-15 seq261322 95.1 8e-15 seq269538 93.3 3e-14 seq260618 93.3 3e-14 seq30399 93.3 3e-14 seq29975 91.5 1e-13 seq227670 82.4 5e-11 >seq45869 Length=5042 Score = 136 bits (150), Expect = 3e-27 Identities = 148/194 (76%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| ||||| || ||||| || |||||||| || |||||||| || Sbjct 4567 AAAATGCAGATCTTCGTGAAAACTCTTACGGGGAAGACGATCACGCTTGAAGTTGAATCG 4508 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| |||| ||| | ||| | || | || ||||| |||||| | || || || Sbjct 4507 AGCGACACTATTGACAATGTCAAAGCTAAGA-TTCAAGACAAGGAAGGTATTCCACCGGA 4449 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| || || || ||||| || || || ||||| | ||| ||| ||| ||||| Sbjct 4448 CCAGCAGCGATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGACGTACTCTAGCTGATTA 4389 Query 23787 CAACATACAAAAAG 23800 |||||| || |||| Sbjct 4388 CAACATTCAGAAAG 4375 >seq260619 Length=5677 Score = 116 bits (128), Expect = 2e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || |||||||||||||| ||||| || ||||| || || || || | | Sbjct 647 ATGCAGATATTTGTTAAAACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAAGCTCA 588 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| ||||| | || | | ||||| ||||| | || ||||| || Sbjct 587 GACACCATTGACAATGTTAAAGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACCA 529 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || || ||||||| || ||| ||| |||||||| Sbjct 528 GCAGAGGCTGATCTTTGCAGGAAAGCAGCTTGAAGACGGTCGTACTCTAGCTGATTACAA 469 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 468 CATTCAGAAAGAGTCAAC 451 >seq250116 Length=2524 Score = 107 bits (118), Expect = 1e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 23603 TACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTG 23662 || || | |||||||| || ||||| || ||||| ||||| || |||||||| || || | Sbjct 411 TATTTCAGATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCG 352 Query 23663 ACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCG 23721 | | ||||| |||| ||| | ||| | || | || ||||| ||||| | || Sbjct 351 AGAGTTCTGACACCATTGATAATGTCAAAGCTAAGA-TTCAAGACAAGGAAGGCATTCCT 293 Query 23722 CCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGC 23781 |||||||| ||| | | || ||||| || ||||| || ||||| | || || | | Sbjct 292 CCAGATCAGCAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCT 233 Query 23782 GATTACAACATACAAAAAGAGTCCAC 23807 ||||||||||| ||||||||||| || Sbjct 232 GATTACAACATCCAAAAAGAGTCTAC 207 >seq183807 Length=6005 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAA-ACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||| || ||| || || ||||| ||||| || |||||||| || || || | | Sbjct 5427 ATGCAGATATTTGTTTAAGACGCTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGCTC 5486 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| | ||||| || ||| ||||| ||||| | || |||||||| Sbjct 5487 TGACACTATTGATAATGTAAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCA 5546 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || ||||| || ||||| | | || | | |||||||| Sbjct 5547 GCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCAAACAGTTGCTGATTACAA 5606 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||| | ||||| || Sbjct 5607 CATCCAAGACGAGTCTAC 5624 Score = 87.8 bits (96), Expect = 1e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 23627 AAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATA 23685 |||| || || ||||| || || ||||| || ||||| | | ||||| |||| ||| Sbjct 5659 AAACTCTGACCGGAAAGACTATAACTCTTGAGGTTGAGAGCTCAGACACCATTGATAATG 5718 Query 23686 TTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTT 23745 | ||| | |||| ||| ||||| |||||| | | ||||| || ||| | | || ||| Sbjct 5719 TCAAAGCTAAAA-TTGAAGACAAGGAAGGTATTTCCCCAGACCAGCAGAGGCTGATCTTT 5777 Query 23746 GCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCC 23805 || || ||| | || ||||| | || || | ||||||||||| ||||| |||||| Sbjct 5778 GCTGGGAAATAGCTTGAAGATGGCCGAACACTTACTGATTACAACATCCAAAAGGAGTCC 5837 Query 23806 AC 23807 || Sbjct 5838 AC 5839 >seq261322 Length=6793 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||||| ||||| || || || || | || || || || Sbjct 4580 AAAATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATTACCTTGGAGGTAGAGTCA 4521 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| |||| | || ||| ||||| ||||| | || ||||| Sbjct 4520 TCAGACACCATTGACAATGTTAAGGC-TAAGATTCAAGACAAGGAAGGCATTCCACCAGA 4462 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| || || || ||||| || || || || || | || || ||| || || Sbjct 4461 CCAGCAGCGATTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACGCTAGCTGACTA 4402 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 4401 CAACATCCAGAAGGAGTCCAC 4381 >seq269538 Length=12246 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || | || || || || || || | || ||||| | Sbjct 213 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 272 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| |||| | || ||||| || ||| | || ||||| || Sbjct 273 GATACCATTGACAATGTGAAAGCAAAGA-TTCAAGACAAGGAGGGTATTCCCCCAGACCA 331 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || ||||| || |||||||| || |||| | ||| | | || ||||| Sbjct 332 ACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTTGCAGACTACAA 391 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| || | ||| | || || | ||| ||||||| Sbjct 392 CATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 439 >seq260618 Length=7988 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||| | || || || || ||||| || || || || | Sbjct 169 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 228 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | |||| || |||||||||||| | || ||||| || Sbjct 229 GACACCATTGACAATGTTAAGGCCAAAA-TTCAGGACAAAGAAGGTATTCCACCAGACCA 287 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| || ||||| || |||| || || | | |||||||| Sbjct 288 GCAGAGGTTGATCTTTGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCTGATTACAA 347 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 348 CATCCAGAAGGAGTCAAC 365 >seq30399 Length=1829 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| |||||||| ||||| || |||||| | || || || | | Sbjct 1429 ATGCAGATTTTTGTTAAGACCCTCACCGGAAAGACCATCACTTTGGAGGTGGAAAGCTCC 1488 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || || ||||| || || | || ||||| || Sbjct 1489 GACACCATTGATAATGTTAAGGC-TAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCA 1547 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || || || || || |||| ||||| | | ||| ||||| Sbjct 1548 GCAGAGGTTGATTTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAA 1607 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 1608 CATCCAGAAGGAGTCGAC 1625 >seq29975 Length=3370 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC---TCC 23667 ||||| || || |||||||| |||| ||||| || || ||||| || || | ||| Sbjct 2527 ATGCAAATCTTTGTTAAAACTCTCATTGGAAAGACCATTACTCTGGATGTGAAGAGTTCC 2468 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||| || | ||| ||||| |||| | ||| ||||||||||| | || |||| Sbjct 2467 A---ACACCATTAACAATGTTAAAGCAAAGA-TTGAAGACAAAGAAGGAATTCCCTCAGA 2412 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| | ||| |||||| || |||||| | | || || | || | | ||||| Sbjct 2411 TCAACAAAGATTAGTATTTGGTGGAAAACAATTTAAGGATGATCATACACTTGCTGATTA 2352 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||| || ||||| ||||| ||| | ||| | || || || Sbjct 2351 CAATATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAG 2313 >seq227670 Length=5094 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || ||||| || ||||| || |||||||| | Sbjct 60 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCC 119 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | || | |||| || || || ||||| | || ||||| || Sbjct 120 GATACTATTGACAATGTGAAGGCCAAAA-TTCAGGATAAGGAAGGGATTCCTCCAGACCA 178 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||| | |||| ||||| || || | | | || | | || ||||| Sbjct 179 GCAGAGACTGATCTTTCC--GCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTACAA 236 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || ||||||||||| |||||| | ||| Sbjct 237 TATTCAGAAAGAGTCCACCTTACATCTTGTT 267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336735935463440