Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq67946 136 3e-27 >seq67946 Length=21248 Score = 136 bits (150), Expect = 3e-27 Identities = 380/578 (66%), Gaps = 9/578 (2%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||||||||||||||| ||||||||||||||||| ||| | || || || || ||| Sbjct 3708 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 3649 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATAT--AGCGGCAAATGACCCAGAAA 4662 ||||| |||||||| || | ||||| | ||||||||| | | | | | | | | | Sbjct 3648 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTG--A 3591 Query 4663 AGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGT 4722 |||| || ||||| || ||||| || || || || | |||| | | | Sbjct 3590 AGAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAG---TTTCGGACC 3534 Query 4723 CTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAG 4782 | | ||||| | ||||| || || || || | ||| || || ||||| | || | Sbjct 3533 CATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTG 3474 Query 4783 CGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 | || ||||| || ||||| | || | || || | || | || | || | Sbjct 3473 CACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGT 3414 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCT 4901 |||| || ||||| ||||| || || || || || || || || |||||| | ||| || Sbjct 3413 ACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCA-CGAGCCTCG 3355 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961 | || || || || || || ||| | | | ||| || || || ||||| | Sbjct 3354 GCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAG 3295 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTC 5021 || |||||||| || | |||||||| || || | | ||| | | | || |||| | Sbjct 3294 GCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCC 3235 Query 5022 CAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCT 5081 ||||| | ||| | | | ||| |||||||| | ||||| || || || ||| Sbjct 3234 CAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCATGGCT 3175 Query 5082 TTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 || |||||||| |||||| | ||||||||||| || Sbjct 3174 TTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGG 3137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425440421056940