Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq298471 105 9e-18 seq276686 91.5 2e-13 >seq298471 Length=8164 Score = 105 bits (116), Expect = 9e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || |||||||||| ||| ||||||||||| || ||||| || ||| | | || Sbjct 5014 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 5073 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||| | || | ||||| || ||| || || ||||| || | ||| | ||||| Sbjct 5074 ATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 5133 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 |||||| || || ||||| || |||| | || || || | ||| || |||| | Sbjct 5134 CATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAAGACCTTTCAAG 5193 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| |||||||| || | || ||||||||| ||||| || || Sbjct 5194 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTATATGAT 5241 >seq276686 Length=16051 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| || || | ||||| || |||| |||| | || | | ||| |||||||| || Sbjct 6023 ACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCC 6082 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| |||||||||||| ||||||||| ||| | | |||||||| | || Sbjct 6083 ATTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTGCCACGAATATTGTGCACAGA 6142 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGAT-ATTAGAGCGCAACGTTTCAATGTATCGTAGA 78336 || || |||||||| | || || | | || | ||| || || | || || || | Sbjct 6143 TACTCCAATTCCTCCAG-CAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATA 6201 Query 78337 TACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 | ||||| ||||| || || ||||| | || || |||||| Sbjct 6202 TGCCCTCAATACTATCGTCTTTCATGCATATCAGGAAGCAGCTA 6245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691984078755200