Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq4407 315 7e-81 seq2709 244 1e-59 seq28047 212 6e-50 seq67946 172 6e-38 >seq4407 Length=459 Score = 315 bits (348), Expect = 7e-81 Identities = 228/263 (87%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 ||||||| ||||||||||||||||||||| ||||| ||||||||||||||| |||||| Sbjct 13 CTCTGTTACCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCTCTGCCTCC 72 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC 8468 | ||||||||| | |||||||||||||||||| |||||||||||||||||||| | || Sbjct 73 CAGGTTCAAGCGAGTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACATACC 132 Query 8469 ACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGG 8528 |||| | ||||||||||||||||| ||||||||| |||||| ||| ||||| |||| Sbjct 133 ACCATATCCAGCTAATTTTTGTATTTCTAGTAGAGACGAGGTTTCGCCACGTTGGTCAGG 192 Query 8529 CTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGA 8588 ||||||| || ||| ||||||| |||||| ||| |||||||||||||||||||||||| Sbjct 193 CTGGTCTTGATCTCTTGACCTC--GTGATCTGCCTACCTCGGCCTCCCAAAGTGCTGGGA 250 Query 8589 TTACAGGCATGAGCCACCGCGCC 8611 |||||||| ||||||||| |||| Sbjct 251 TTACAGGCGTGAGCCACCACGCC 273 >seq2709 Length=307 Score = 244 bits (270), Expect = 1e-59 Identities = 231/292 (79%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||||||||| || ||||| || || ||||||||| ||||| | | |||||||| |||| Sbjct 14 TCTCACTCTATTCCCCAGACTAGAATGCAGTGGCATGATCACAGATCACTGCAGCCTCGA 73 Query 8404 CCTCCCGGGT-TCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCA 8462 | |||| | ||| | || |||| ||||||||||| |||||||||||| ||||| || Sbjct 74 CTTCCCCAGACTCAGGTGATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGACTACAGCCA 133 Query 8463 AAAGCCACCACGCCAAGCTAATTTTTGTATTTTTA-GTAGAGAGAGGGTTTCACCATGTT 8521 | |||||| ||| |||||||||||||||||| ||||||| | ||||||||||||| Sbjct 134 TACACCACCATGCCTGGCTAATTTTTGTATTTTTGTGTAGAGATGGTGTTTCACCATGTT 193 Query 8522 GGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGT 8581 ||||||| |||| ||||||||| |||| ||||||| ||| | |||||||||||| Sbjct 194 TCCCAGGCTAGTCTTAAACTCCTGAGCTCAAGTGATCCTCCTCGTTTAGCCTCCCAAAGT 253 Query 8582 GCTGGGATTACAGGCATGAGCCACCGCGCCTGGCCCTTTAAAAAGTTTTCTT 8633 |||||||||||||| ||||||| | |||||||| | | | |||||||| Sbjct 254 GCTGGGATTACAGGTGTGAGCCATTGGGCCTGGCCTTGTTGATTGTTTTCTT 305 >seq28047 Length=322 Score = 212 bits (234), Expect = 6e-50 Identities = 176/214 (82%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||| | || |||||||||||||||||| ||||| |||||||| || ||| ||||| Sbjct 216 CTCTATCACCTAGGCTGGAGTGCAGTGGCGCCATCTCAGCTCACTGTAAGCTCTACCTCC 157 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC 8468 || |||||||| |||||||||||||||||||| ||||| |||||| || ||| | Sbjct 156 CGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTACCTGGGACTATAGGTGTGCATC 97 Query 8469 ACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGG 8528 |||| || ||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 96 ACCATGCACAGCTAATTTTTGTATTTTTAGTAGATGCAGAATTTCACCATGTTGGCCAGG 37 Query 8529 CTGGTCTCGAACTCCTGACCTCATGTGATCCACC 8562 ||||||||| ||| ||||||| |||||||||| Sbjct 36 ATGGTCTCGATCTCTTGACCTC--GTGATCCACC 5 >seq67946 Length=21248 Score = 172 bits (190), Expect = 6e-38 Identities = 397/597 (66%), Gaps = 11/597 (2%) Strand=Plus/Minus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 ||||| ||||||||||| || | ||||| || || ||| || ||||| || || ||| Sbjct 3708 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 3649 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAG 23625 ||||| |||||||| || |||||||| | ||||||||| | | || |||| ||| Sbjct 3648 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAG 3589 Query 23626 AAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCA 23685 ||||| || |||||| ||||| ||||| | ||| | || ||| | | || Sbjct 3588 AAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTT---TCGGACCCA 3532 Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCT 23745 ||||| | ||| || |||||| || ||||| ||||| |||||||| Sbjct 3531 TCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGC- 3473 Query 23746 TTTAAGAGAAAAGTT----TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACT 23801 | | | || || ||||| ||| ||| | || || | || | || ||||| Sbjct 3472 ---ACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACT 3416 Query 23802 ATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 ||||| || ||||| ||||| ||||| || || || |||||||| ||| | ||| || Sbjct 3415 GTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTC 3356 Query 23862 AGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACT 23921 | | || ||||| || | || ||| ||| | || || ||| || || || Sbjct 3355 GGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGA 3296 Query 23922 AGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTT 23981 || ||||| || |||||||||| | || ||||| |||||| | | || || |||| Sbjct 3295 GGCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTC 3236 Query 23982 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGC 24041 ||| | | | |||| | || | ||| ||||| || | ||||| ||| ||||| ||| Sbjct 3235 CCAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCATGGC 3176 Query 24042 ACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTATC 24098 ||| |||||| |||||| | || || ||||| || || ||||| ||| Sbjct 3175 TTTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATC 3119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519472579252000